Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0119
         (724 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF457558-1|AAL68788.1|   56|Anopheles gambiae hypothetical prote...    23   7.2  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   9.6  

>AF457558-1|AAL68788.1|   56|Anopheles gambiae hypothetical protein
           11 protein.
          Length = 56

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 717 IVFKSXIILICLXN*CFFFYYTH 649
           I F++ I L+ L   C FFY+TH
Sbjct: 3   IFFQAGIKLLVLLI-CLFFYHTH 24


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 194  FAVYHAALE*VSLYGVSNEACEDYIIPASSMALLCSIADVHG 319
            FA+Y+  +  V  Y  S   C   ++ ++   L   +  VHG
Sbjct: 1959 FALYNYIIGYVMFYVRSTHECSQQLVGSALSVLWMVVHSVHG 2000


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 718,905
Number of Sequences: 2352
Number of extensions: 15597
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73597131
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)