Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0119
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74035-4|CAA98483.1|  373|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z84712-2|CAB06546.2|  551|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81130-13|CAB03421.2|  551|Caenorhabditis elegans Hypothetical p...    28   5.9  

>Z74035-4|CAA98483.1|  373|Caenorhabditis elegans Hypothetical
           protein F47G9.6 protein.
          Length = 373

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -2

Query: 171 SMITVVPGSTDELYSGGGWCDGKNEMTASIHKNNTAYSAASSTFSRVNN 25
           S   + P STD+L +  G+     E    +HK N  +S   + F+  NN
Sbjct: 107 SKFEISPASTDKLVAKSGYLS--TEWMVGLHKYNEYFSEEDNLFAYTNN 153


>Z84712-2|CAB06546.2|  551|Caenorhabditis elegans Hypothetical
           protein T24B1.1 protein.
          Length = 551

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 156 VPGSTDELYSGGGWCDGKNEMTASIHKNNTAYSAASSTFSRVNN 25
           +P      Y+G GW  G+N    S   +    +AAS +++ V N
Sbjct: 70  LPSRAQSDYTGAGWRGGRNYEQGSSSTHQPGVTAASESWTMVLN 113


>Z81130-13|CAB03421.2|  551|Caenorhabditis elegans Hypothetical
           protein T24B1.1 protein.
          Length = 551

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 156 VPGSTDELYSGGGWCDGKNEMTASIHKNNTAYSAASSTFSRVNN 25
           +P      Y+G GW  G+N    S   +    +AAS +++ V N
Sbjct: 70  LPSRAQSDYTGAGWRGGRNYEQGSSSTHQPGVTAASESWTMVLN 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,523,914
Number of Sequences: 27780
Number of extensions: 329140
Number of successful extensions: 705
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)