Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0119
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19380.1 68416.m02458 U-box domain-containing protein contain...    29   2.4  
At1g49780.1 68414.m05582 U-box domain-containing protein similar...    29   3.1  
At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c...    28   5.5  
At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c...    28   5.5  
At3g14340.1 68416.m01813 expressed protein                             27   9.5  

>At3g19380.1 68416.m02458 U-box domain-containing protein contains
           similarity to immediate-early fungal elicitor protein
           CMPG1 GI:14582200 [Petroselinum crispum]; contains Pfam
           profile PF04564: U-box domain
          Length = 421

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 91  RHLVLTIAPPATGVEFIRATWNHCD-HRQCVSRDLFCRVPCG 213
           RH+ +T   P   ++ + A ++ CD  R   + +L CR P G
Sbjct: 276 RHIAITAGAPEILIDRLAADFDRCDTERALATVELLCRTPEG 317


>At1g49780.1 68414.m05582 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 421

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 91  RHLVLTIAPPATGVEFIRATWNHCD-HRQCVSRDLFCRVPCG 213
           RHL ++   P   ++ + A ++ CD  R   + +L CR+P G
Sbjct: 278 RHLAISAGAPGILIDRLAADFDRCDTERGLATVELLCRLPEG 319


>At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 364 GRQAYGPPDGEWLPSPMDVSN 302
           GR    P  GEW P+P D S+
Sbjct: 324 GRDRPNPSTGEWFPAPFDASS 344


>At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 364 GRQAYGPPDGEWLPSPMDVSN 302
           GR    P  GEW P+P D S+
Sbjct: 324 GRDRPNPSTGEWFPAPFDASS 344


>At3g14340.1 68416.m01813 expressed protein 
          Length = 87

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 350 RPT*W*VVTVAHGRQQCCKAEPCCWLELCNLHKPRLK 240
           + T W  +T  HG  QC K   CC+  + +  KP+ K
Sbjct: 12  KATNWEQITKKHGSVQCVKG-CCCYSLIISFMKPKEK 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,285,592
Number of Sequences: 28952
Number of extensions: 293034
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)