Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0118
         (775 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    25   0.67 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    24   1.6  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    24   1.6  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   8.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   8.3  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 505 YRGPHNCHVSLTTHPAXVDPMYEIII 582
           +R PH CH +L + P     ++E+++
Sbjct: 343 FRMPHRCHGNLQSCPTRSHAVWEMVL 368


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 505 YRGPHNCHVSLTTHPAXVDPMYEIII 582
           +R PH C+ +    P+   P++EI++
Sbjct: 335 FRMPHKCNGNAHNCPSRSHPVWEIVM 360


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 505 YRGPHNCHVSLTTHPAXVDPMYEIII 582
           +R PH C+ +    P+   P++EI++
Sbjct: 342 FRMPHKCNGNAHNCPSRSHPVWEIVM 367


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 40  DNLQYQFFPVSSGSVQFKVRAAND 111
           DNLQY F    SG++ + +    D
Sbjct: 201 DNLQYSFDNQCSGTIDWALPKQED 224


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 466 YTXTCPEYRIPLHLRFSRSLWHPS 395
           YT   P+   P HL+   +  HPS
Sbjct: 73  YTQLQPQRLAPTHLQSPNTQTHPS 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,874
Number of Sequences: 336
Number of extensions: 4389
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)