Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0118
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||... 29 0.56
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 29 0.98
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 27 3.0
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 27 3.9
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 27 3.9
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 27 3.9
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 27 3.9
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 26 5.2
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 26 6.9
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 26 6.9
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 9.1
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 25 9.1
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 9.1
>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 29.5 bits (63), Expect = 0.56
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = -3
Query: 353 SDQDMNGIASPS---RPAEIMPLSQRTQKPRYSP 261
SD ++ G+ P +PA +PLS+R+ P Y+P
Sbjct: 30 SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 28.7 bits (61), Expect = 0.98
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 511 GPHNCHVSLTTHPAXVDPMYEIIIGGWENTQSVIRYCRQK 630
GPH+ L +HP + + +I + + + Q V+ YC K
Sbjct: 142 GPHHIQELLDSHPKIIPCVNQIELHPFCSQQKVVDYCESK 181
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 224 IRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSYLGLIPNLSQFTTSE 385
+ L + F G V G V +A+ + RVK ++LG P + T SE
Sbjct: 564 VELSISKNIFFIGGGKAVHGLVNLASSRNVSDRVKCMVNFLGTEPLVGLKTASE 617
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = -2
Query: 312 SGDNAAIPTNPKT-----TIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLI 157
S + IP+ P T + + KNS A + +L + +D S+SPA +H +I
Sbjct: 449 SSNKRLIPSTPPTKKPINAVLDAAKNSAAKDLHLAKMKLNNKNDESSLSPAKSHAVI 505
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -3
Query: 329 ASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIG 150
+ PS+P + +P+S +PP R +S+ S L + L +FP P ++ Y
Sbjct: 160 SKPSKPRKKVPVSHPLPP---TPPSREEHVSVPRESSLFTYEDDPLPSFPSPYMVDDYYT 216
Query: 149 SD 144
D
Sbjct: 217 QD 218
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -3
Query: 359 SGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSG-----LVLFFLMT 195
S + D G S P+E+MPL + + P +PG +++ + L FF+ +
Sbjct: 214 SPTSGDQTGNISFGLPSEVMPLFPQIEAVYEMYPHSLPGFNVNITTNSKDTRLARFFVSS 273
Query: 194 LLAF 183
L+ F
Sbjct: 274 LIPF 277
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +1
Query: 415 WKIEDGAEFDTPDRLXYKFGPVASGSLEFDY----RGPHNCHVSLTTHPAXVDPMYEII 579
+ I+D A++D PD + Y SG + Y +G SL+ HP D + +I
Sbjct: 190 FSIDDFAQYDIPDTIDYIL--KTSGQTKLTYIGFSQGTAQAFASLSIHPLLNDKINSLI 246
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 374 TTSESAQAGVPQAPGKSKMERNSI--LRTGXSISLDLS 481
T + +AGVP+ G+ RN I LR+ S+SL LS
Sbjct: 318 TENVENEAGVPRKRGRPPGARNKIKRLRSEPSVSLTLS 355
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 491 EPEATGPNLYXNLSGVSNSAPSSI 420
EPE PN + +G+SNS P I
Sbjct: 315 EPEGLDPNSWWYPNGLSNSMPEEI 338
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 651 RDRHLVGFLPAITNHRLCVLPT 586
+++ L FLPA+ NHR VL T
Sbjct: 349 QEQQLQVFLPALANHRKVVLST 370
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 13 LMSWXVATDDNLQYQFFPVSSGSVQFKVRAANDAHVA 123
+ SW DD QF S+GS+ ++ + + +A
Sbjct: 373 MRSWHNLFDDKKMEQFLNTSTGSISYEYNSQQPSSIA 409
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +1
Query: 358 EPFPVYYVGVCTGWGATGSWKIEDGAEFDTP---DRLXYKFG 474
E +P+ Y C TG+W F TP D + +K+G
Sbjct: 393 ESYPIRYRSKCAAVATTGNWLWGFLITFFTPFISDSIGFKYG 434
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 278 KPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIGSD 144
K Y+P I GL++ TLS +LM L+ P ++ + G D
Sbjct: 50 KVLYAPRTTIEGLNLPTLSSSYYKWLMDLVNIPD-DVVQNCAGLD 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,120
Number of Sequences: 5004
Number of extensions: 73492
Number of successful extensions: 213
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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