Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0118
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 35 0.062
06_01_0172 + 1362101-1363708 32 0.44
02_02_0313 - 8866182-8866381,8866470-8866638 32 0.44
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 31 1.0
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 29 3.1
12_02_0259 + 16527788-16527842,16528014-16528381 28 7.2
08_02_0851 - 21866088-21866210,21866311-21866413,21866531-218667... 28 7.2
06_01_1082 - 8847795-8848033,8848511-8848724 28 7.2
03_02_0800 + 11337206-11337532,11337634-11337957,11338060-113381... 28 7.2
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 9.5
07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376... 28 9.5
04_04_1230 + 31929261-31929386,31929497-31929643,31929974-319300... 28 9.5
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 35.1 bits (77), Expect = 0.062
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Frame = +1
Query: 49 QYQFFPVSSGSVQFKVRAANDAHVALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKPDK 228
+++F G + F+ A ND V L Q Y + + ++ +R K K
Sbjct: 22 EFRFRETGRGCITFEASAHND--VTLVFREQPGSQHYHYKMDNSRHYIVILGSHRNKRLK 79
Query: 229 VEIESP--------GILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP-FPVY 375
+E++ G+ ++ +W+ G+IS GR W DP+P V
Sbjct: 80 IEVDGKTVVDVAGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQ 139
Query: 376 YVGVCTGW 399
YVG+ + W
Sbjct: 140 YVGL-SSW 146
>06_01_0172 + 1362101-1363708
Length = 535
Score = 32.3 bits (70), Expect = 0.44
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +2
Query: 170 LEAGETLRASSGKIEPSPIRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSY-- 343
L + LR ++ +P +L + P L NI++ G VGI LDA +K+
Sbjct: 167 LVSARRLRLAAALFRAAPTKLYI-TPN-LVSCNILLKGLVGIG---DLDAALKVLDEMPG 221
Query: 344 LGLIPNLSQFTTSESAQAGVPQAPGKSKM 430
LG+ P++ +TT SA G G K+
Sbjct: 222 LGITPDVVTYTTVLSAYCGKGDIEGAQKL 250
>02_02_0313 - 8866182-8866381,8866470-8866638
Length = 122
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 373 YYVGVCTGW--GATGSWKIEDGAEFDTPDRLXYKFGPVASGSLEFDYRGPHNCHV 531
++VG GW G G W E+G F D L +K+ P+ L+ D+ G C V
Sbjct: 29 WHVGDDKGWTFGVAG-W--ENGKAFKVGDVLVFKYSPMMHNVLQVDHAGYDGCKV 80
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 253 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 363
L G +R WV W +I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +1
Query: 241 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 378
SP +L GG Y G W+R I+ G + P + + D P ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259
>12_02_0259 + 16527788-16527842,16528014-16528381
Length = 140
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -2
Query: 339 EWNSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVS 181
E +S +A+ G +A+P PK +F + + L+G G P++ SV+
Sbjct: 68 EVSSVVVAAPGFRSAVPVEPK--LFRRIAGGEEKGYYLVGDGEAIPNNGSSVT 118
>08_02_0851 -
21866088-21866210,21866311-21866413,21866531-21866744,
21866877-21867075,21867171-21868151
Length = 539
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 603 LCVLPTADDYFIHWIYXCGMSCEGNVAVVR 514
LCVLP Y +H I CGM + V++
Sbjct: 226 LCVLPMFHVYSLHSILLCGMRAGAAIVVMK 255
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/67 (26%), Positives = 24/67 (35%)
Frame = +1
Query: 373 YYVGVCTGWGATGSWKIEDGAEFDTPDRLXYKFGPVASGSLEFDYRGPHNCHVSLTTHPA 552
YYVG GWG W + G F D L +K+ +G C V A
Sbjct: 44 YYVGDAAGWGRNLDWWLA-GKTFYAGDVLVFKYNKEYHDVAVVGGKGYRRCKVPRNKDTA 102
Query: 553 XVDPMYE 573
+ Y+
Sbjct: 103 VLRTGYD 109
>03_02_0800 +
11337206-11337532,11337634-11337957,11338060-11338194,
11338280-11338519
Length = 341
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 589 WENT-QSVIRYCRQKPDKVTIPTPGIMNP 672
W +T Q I YC+Q PDKV PT + P
Sbjct: 152 WSHTPQYQIGYCQQCPDKVAWPTAELGPP 180
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -3
Query: 350 DQDMNGIASPSRPAEIMPLS-QR----TQKPRYSPPLRIP 246
D+ + SP+ PA P S QR Q PRY PPLR P
Sbjct: 324 DRAASPARSPASPARRGPQSPQRRVSPAQSPRYQPPLRKP 363
>07_01_0505 -
3759254-3759490,3759846-3759989,3760135-3760347,
3760439-3760990,3761339-3761806,3761959-3762023,
3762133-3762265,3763798-3764022
Length = 678
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 364 FPVYYVGVCTGWGATGSWKIEDGAEFDT 447
+P Y G GWG ++ DGAE T
Sbjct: 113 YPAYLYGAYGGWGEYSTYLSHDGAETPT 140
>04_04_1230 +
31929261-31929386,31929497-31929643,31929974-31930065,
31930159-31930255,31930533-31930576,31930708-31930796,
31931083-31931174,31931266-31931412,31931539-31931644,
31931736-31931812,31932281-31932352,31932738-31932865,
31932947-31933142,31933206-31933407,31933642-31933691
Length = 554
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 246 GAFNFNLIGLGSIFPDDALSVSPASNHHLIHRIRFLRAC 130
G++NF+L L + D A + PAS+ L+ +R R C
Sbjct: 11 GSYNFHLRSLSAASRDSAAAADPASDPILLESVR--RVC 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,026,516
Number of Sequences: 37544
Number of extensions: 530068
Number of successful extensions: 1494
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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