Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0118
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)                   31   1.0  
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)                 30   2.4  
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)              29   3.2  
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)                    29   5.5  
SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7)                      29   5.5  
SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)           29   5.5  
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)                   29   5.5  
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)           28   7.3  
SB_7220| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.6  
SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          28   9.6  
SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018)               28   9.6  

>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
          Length = 415

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 216 GSIFPDDALSVSPASNHHL-IHRIRFLRACRERDVGIIRCSDFEL 85
           GSIF D    VS   NH L + R + L  C+ER++G     D EL
Sbjct: 303 GSIFHDKTFIVSDLRNHVLRVFRQKGLTICKERNIGQRGGKDGEL 347


>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
          Length = 878

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 139 QESDPMYEVMIGGWGNAKSVIRKN-RTKPDKVEIESPGILNGG 264
           Q+ D MYEV+I       + +RK+ R+  D  E E PGI+ GG
Sbjct: 766 QQQDQMYEVLI------HNALRKSFRSDEDDDENEEPGIIRGG 802


>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
          Length = 717

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 561 IYXCGMSCEGNVAVVRSAVIEFQRTRGDRSK 469
           +Y C  SCE N  +  +AV  F +TR  R+K
Sbjct: 224 LYLCHESCEENAGLFETAVGWFSQTRWQRTK 254


>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 133 GPQESDPMYEVMIGGWGNAKSVIRKNRT-KPDKVEIESPGILNGGEY 270
           GP +   +    +G W    S  R  +T  P KV +  PGI NG  Y
Sbjct: 84  GPTQDCDVNSGEVGPWKEVPSCSRVGQTGDPSKVRVYGPGIENGLRY 130


>SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)
          Length = 283

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = +1

Query: 73  SGSVQFKVRAANDAHVALTTGPQESDPMYEVMI-------GGWGNAKSVIRKNRTKPDKV 231
           SGSV + V  A  +H  L    + + P+Y + +          G    V+R    +P+K 
Sbjct: 84  SGSVNYFVAPAESSHSQLVLIEELNQPIYSLTLKIIICLSETTGTLPLVLRNALPRPEKY 143

Query: 232 EIESPGILNG 261
              SPG L G
Sbjct: 144 PENSPGTLTG 153


>SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7)
          Length = 245

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +2

Query: 281 GFVGIAALSPLDARVKLFHSYLGLIPNLSQFTTSESAQAGVPQAPGKSKMERNSI 445
           G  G   L P+        S  G +P+L Q     S  + +P +PG+  + R ++
Sbjct: 93  GVPGAPTLVPIQRPAPSVPSPTGRVPHLDQIPHVPSGPSSLPSSPGEPLISRGTV 147


>SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)
          Length = 262

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +2

Query: 347 GLIPNLSQFTTSESAQA-GVPQAPGKSKMERNSILRTGXSISLDLSPLVLWNSITADRTT 523
           G +  L Q++   + +  G+PQ   K   +R  I      I + ++P  +W S     + 
Sbjct: 104 GKLDGLEQYSRRNNIRIDGIPQTEEKEDTDRLIIETIKAKIGIVIAPADIWRSHRVGHSK 163

Query: 524 ATFPSQLI 547
            + P Q+I
Sbjct: 164 GSTPRQII 171


>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
          Length = 2153

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 362 LSQFTTSESAQAGVPQAPGK-SKMERNS 442
           L +FT + +++ G+P  PGK S++ +NS
Sbjct: 448 LQEFTQTHASKGGIPSTPGKTSEVSKNS 475


>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
          Length = 225

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 229 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 381
           + I + GI +  +   FWV + S  +  G     I    W+DP+P  V YY+
Sbjct: 1   LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50


>SB_7220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 550 RDEL*GKRGSCAVRGNRIPKNQRRQVQTYTXTCPEYRIPLHL 425
           R +  G R   AV G+   K    Q    T TCP+Y+ PLH+
Sbjct: 49  RGQTRGPREYEAVGGSGAEKGGEGQYAELTSTCPDYQ-PLHI 89


>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 221 PIRLKLKAPEFLTEGNIVVFGFVG-IAALSPLDARVKLFHSYLG 349
           P  ++ K P  L +G I+  GF+G ++AL      ++LF    G
Sbjct: 100 PYVIRPKGPRLLRQGTIMKAGFIGLVSALGVYACNLELFRRCAG 143


>SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018)
          Length = 1066

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 619 CRQKPDKVTIPTPGI-MNPNEF 681
           CRQ P KV +P PG+  +P+++
Sbjct: 930 CRQGPTKVVLPPPGVFQSPDQY 951


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,711,019
Number of Sequences: 59808
Number of extensions: 576787
Number of successful extensions: 1457
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)