Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0118
(775 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY101765-1|AAM50084.1| 1885|Homo sapiens C3 and PZP-like alpha-2... 89 1e-17
AB033109-1|BAA86597.1| 1884|Homo sapiens KIAA1283 protein protein. 89 1e-17
BC070047-1|AAH70047.1| 331|Homo sapiens epilepsy, progressive m... 31 3.5
AL365193-1|CAI21675.1| 331|Homo sapiens epilepsy, progressive m... 31 3.5
AL023806-1|CAI21419.1| 331|Homo sapiens epilepsy, progressive m... 31 3.5
AF284580-1|AAG18377.1| 331|Homo sapiens progressive myoclonus e... 31 3.5
AF084535-1|AAC83347.2| 331|Homo sapiens laforin protein. 31 3.5
AF485466-1|AAL96553.1| 104|Homo sapiens immunoglobulin light ch... 31 6.1
AF485464-1|AAL96551.1| 104|Homo sapiens immunoglobulin light ch... 31 6.1
AF485458-1|AAL96545.1| 104|Homo sapiens immunoglobulin light ch... 31 6.1
AJ404468-1|CAB94756.1| 4486|Homo sapiens axonemal dynein heavy c... 30 8.0
AF485474-1|AAL96561.1| 104|Homo sapiens immunoglobulin light ch... 30 8.0
AF257737-1|AAF69004.1| 4486|Homo sapiens ciliary dynein heavy ch... 30 8.0
>AY101765-1|AAM50084.1| 1885|Homo sapiens C3 and PZP-like
alpha-2-macroglobulin domain containing 8 protein.
Length = 1885
Score = 89.4 bits (212), Expect = 1e-17
Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Frame = +1
Query: 28 VATDDNLQYQFF--PVSSGSVQFKVRAANDAHVALTTGPQESDPMYEVMIGGWGNAKSVI 201
++T + ++Q+ P+ VRA NDA VAL++GPQ++ M E+++GG N +S I
Sbjct: 953 ISTPNKYEFQYVQRPLRLTRFDVAVRAHNDARVALSSGPQDTAGMIEIVLGGHQNTRSWI 1012
Query: 202 RKNRTKPDKVEIESPGILNGGEYRGFWVRWDSGIISAGREGE---AIPFISWSDPEPFPV 372
++ + IL+ E+R FW+ W G+I G E ++W+ P P V
Sbjct: 1013 STSKMGEPVASAHTAKILSWDEFRTFWISWRGGLIQVGHGPEPSNESVIVAWTLPRPPEV 1072
Query: 373 YYVGVCTGWGATGSWKIEDGAEFD 444
++G TGWG+ G ++I E D
Sbjct: 1073 QFIGFSTGWGSMGEFRIWRKMEVD 1096
Score = 42.7 bits (96), Expect = 0.001
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = +1
Query: 445 TPDRLXYKF--GPVASGSLEFDYRGPHNCHVSLTTHPAXVDPMYEIIIGGWENTQSVIRY 618
TP++ +++ P+ + R ++ V+L++ P M EI++GG +NT+S I
Sbjct: 955 TPNKYEFQYVQRPLRLTRFDVAVRAHNDARVALSSGPQDTAGMIEIVLGGHQNTRSWIST 1014
Query: 619 CRQKPDKVTIPTPGIMNPNEFXXFLIEWKCXXL-VGA*PDVGN 744
+ + T I++ +EF F I W+ + VG P+ N
Sbjct: 1015 SKMGEPVASAHTAKILSWDEFRTFWISWRGGLIQVGHGPEPSN 1057
>AB033109-1|BAA86597.1| 1884|Homo sapiens KIAA1283 protein protein.
Length = 1884
Score = 89.4 bits (212), Expect = 1e-17
Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Frame = +1
Query: 28 VATDDNLQYQFF--PVSSGSVQFKVRAANDAHVALTTGPQESDPMYEVMIGGWGNAKSVI 201
++T + ++Q+ P+ VRA NDA VAL++GPQ++ M E+++GG N +S I
Sbjct: 952 ISTPNKYEFQYVQRPLRLTRFDVAVRAHNDARVALSSGPQDTAGMIEIVLGGHQNTRSWI 1011
Query: 202 RKNRTKPDKVEIESPGILNGGEYRGFWVRWDSGIISAGREGE---AIPFISWSDPEPFPV 372
++ + IL+ E+R FW+ W G+I G E ++W+ P P V
Sbjct: 1012 STSKMGEPVASAHTAKILSWDEFRTFWISWRGGLIQVGHGPEPSNESVIVAWTLPRPPEV 1071
Query: 373 YYVGVCTGWGATGSWKIEDGAEFD 444
++G TGWG+ G ++I E D
Sbjct: 1072 QFIGFSTGWGSMGEFRIWRKMEVD 1095
Score = 42.7 bits (96), Expect = 0.001
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = +1
Query: 445 TPDRLXYKF--GPVASGSLEFDYRGPHNCHVSLTTHPAXVDPMYEIIIGGWENTQSVIRY 618
TP++ +++ P+ + R ++ V+L++ P M EI++GG +NT+S I
Sbjct: 954 TPNKYEFQYVQRPLRLTRFDVAVRAHNDARVALSSGPQDTAGMIEIVLGGHQNTRSWIST 1013
Query: 619 CRQKPDKVTIPTPGIMNPNEFXXFLIEWKCXXL-VGA*PDVGN 744
+ + T I++ +EF F I W+ + VG P+ N
Sbjct: 1014 SKMGEPVASAHTAKILSWDEFRTFWISWRGGLIQVGHGPEPSN 1056
>BC070047-1|AAH70047.1| 331|Homo sapiens epilepsy, progressive
myoclonus type 2A, Lafora disease (laforin) protein.
Length = 331
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 424 EDGAEFDTPDRLXYKF-GPVASGSLEFDYRGPHNCHVSLTTHPAXVDPMYEIIIGGW 591
+DGAE D YKF G L ++ GPH+ VD +Y + IG W
Sbjct: 73 QDGAEPGRVDTFWYKFLKREPGGELSWEGNGPHHDRCCTYNENNLVDGVYCLPIGHW 129
>AL365193-1|CAI21675.1| 331|Homo sapiens epilepsy, progressive
myoclonus type 2A, Lafora disease (laforin) protein.
Length = 331
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 424 EDGAEFDTPDRLXYKF-GPVASGSLEFDYRGPHNCHVSLTTHPAXVDPMYEIIIGGW 591
+DGAE D YKF G L ++ GPH+ VD +Y + IG W
Sbjct: 73 QDGAEPGRVDTFWYKFLKREPGGELSWEGNGPHHDRCCTYNENNLVDGVYCLPIGHW 129
>AL023806-1|CAI21419.1| 331|Homo sapiens epilepsy, progressive
myoclonus type 2A, Lafora disease (laforin) protein.
Length = 331
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 424 EDGAEFDTPDRLXYKF-GPVASGSLEFDYRGPHNCHVSLTTHPAXVDPMYEIIIGGW 591
+DGAE D YKF G L ++ GPH+ VD +Y + IG W
Sbjct: 73 QDGAEPGRVDTFWYKFLKREPGGELSWEGNGPHHDRCCTYNENNLVDGVYCLPIGHW 129
>AF284580-1|AAG18377.1| 331|Homo sapiens progressive myoclonus
epilepsy type 2 protein.
Length = 331
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 424 EDGAEFDTPDRLXYKF-GPVASGSLEFDYRGPHNCHVSLTTHPAXVDPMYEIIIGGW 591
+DGAE D YKF G L ++ GPH+ VD +Y + IG W
Sbjct: 73 QDGAEPGRVDTFWYKFLKREPGGELSWEGNGPHHDRCCTYNENNLVDGVYCLPIGHW 129
>AF084535-1|AAC83347.2| 331|Homo sapiens laforin protein.
Length = 331
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 424 EDGAEFDTPDRLXYKF-GPVASGSLEFDYRGPHNCHVSLTTHPAXVDPMYEIIIGGW 591
+DGAE D YKF G L ++ GPH+ VD +Y + IG W
Sbjct: 73 QDGAEPGRVDTFWYKFLKREPGGELSWEGNGPHHDRCCTYNENNLVDGVYCLPIGHW 129
>AF485466-1|AAL96553.1| 104|Homo sapiens immunoglobulin light chain
variable region protein.
Length = 104
Score = 30.7 bits (66), Expect = 6.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 340 ISWSDPEPFPVYYVGVCTGWGATGSWKIE 426
IS DPE F VYY + WG G K+E
Sbjct: 73 ISSLDPEDFAVYYCQQRSNWGFGGGTKVE 101
>AF485464-1|AAL96551.1| 104|Homo sapiens immunoglobulin light chain
variable region protein.
Length = 104
Score = 30.7 bits (66), Expect = 6.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 340 ISWSDPEPFPVYYVGVCTGWGATGSWKIE 426
IS +PE F VYY T WG G K+E
Sbjct: 73 ISSLEPEDFAVYYCQQRTNWGFGGGTKVE 101
>AF485458-1|AAL96545.1| 104|Homo sapiens immunoglobulin light chain
variable region protein.
Length = 104
Score = 30.7 bits (66), Expect = 6.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 340 ISWSDPEPFPVYYVGVCTGWGATGSWKIE 426
IS +PE F VYY T WG G K+E
Sbjct: 73 ISSLEPEDFAVYYCQQRTNWGFGGGTKVE 101
>AJ404468-1|CAB94756.1| 4486|Homo sapiens axonemal dynein heavy
chain 9 protein.
Length = 4486
Score = 30.3 bits (65), Expect = 8.0
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -3
Query: 248 PGLSISTLSGLV----LFFLMTLLAFPQPPIITSYIGSDSCGPVVSATWASFAAL 96
PGL + SGL LFFL T P+PP S+ G+ CG + +A AAL
Sbjct: 85 PGLEVGPESGLAGAKALFFLRT---GPEPPGPDSFRGAVVCGDLPAAPLEHLAAL 136
>AF485474-1|AAL96561.1| 104|Homo sapiens immunoglobulin light chain
variable region protein.
Length = 104
Score = 30.3 bits (65), Expect = 8.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 340 ISWSDPEPFPVYYVGVCTGWGATGSWKIE 426
IS +PE F VYY T WG G K+E
Sbjct: 73 ISSLEPEDFAVYYCQQRTDWGFGGGTKVE 101
>AF257737-1|AAF69004.1| 4486|Homo sapiens ciliary dynein heavy chain
9 protein.
Length = 4486
Score = 30.3 bits (65), Expect = 8.0
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -3
Query: 248 PGLSISTLSGLV----LFFLMTLLAFPQPPIITSYIGSDSCGPVVSATWASFAAL 96
PGL + SGL LFFL T P+PP S+ G+ CG + +A AAL
Sbjct: 85 PGLEVGPESGLAGAKALFFLRT---GPEPPGPDSFRGAVVCGDLPAAPLEHLAAL 136
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,345,231
Number of Sequences: 237096
Number of extensions: 2891966
Number of successful extensions: 7131
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7129
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -