Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0118
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical pr...    34   0.098
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    34   0.098
AC024843-9|AAF60836.1|  263|Caenorhabditis elegans Hypothetical ...    31   0.69 
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    29   4.9  
Z68215-2|CAA92451.2|  452|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z50177-1|CAA90543.2|  607|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ...    28   6.4  
AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical...    28   6.4  

>L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK1236.3b protein.
          Length = 810

 Score = 34.3 bits (75), Expect = 0.098
 Identities = 21/81 (25%), Positives = 36/81 (44%)
 Frame = +2

Query: 20  HGMWQQMTTFNTNSSLFQVDQFSSKSEQRMMPTSRSRQARKNRILCMR**LEAGETLRAS 199
           HG +QQ   ++         Q SS       P S S +A +  +  +R      E +RA 
Sbjct: 179 HGQYQQYQEYHQQHQAMNDGQSSSSVPSTSSP-SCSSEANRKEMETVREPAGPSELMRAI 237

Query: 200 SGKIEPSPIRLKLKAPEFLTE 262
           +  + P+P+ +K++ P  L E
Sbjct: 238 NAPVAPAPVVIKIETPVALPE 258


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 34.3 bits (75), Expect = 0.098
 Identities = 21/81 (25%), Positives = 36/81 (44%)
 Frame = +2

Query: 20  HGMWQQMTTFNTNSSLFQVDQFSSKSEQRMMPTSRSRQARKNRILCMR**LEAGETLRAS 199
           HG +QQ   ++         Q SS       P S S +A +  +  +R      E +RA 
Sbjct: 369 HGQYQQYQEYHQQHQAMNDGQSSSSVPSTSSP-SCSSEANRKEMETVREPAGPSELMRAI 427

Query: 200 SGKIEPSPIRLKLKAPEFLTE 262
           +  + P+P+ +K++ P  L E
Sbjct: 428 NAPVAPAPVVIKIETPVALPE 448


>AC024843-9|AAF60836.1|  263|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.9 protein.
          Length = 263

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 329 ASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPP 171
           A+PS P  I     +T+KP  S P +I   S +  +  +  F  TL + P  P
Sbjct: 186 ANPSLPVHIQTFRVKTRKPVLSRPTKIRFSSEADRNSFIFSFSKTLRSLPDRP 238


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = -2

Query: 333 NSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLIH 154
           +S  L+S   N +  + P+T+    +  S +F+F+L       P  +L +SP  ++H+IH
Sbjct: 261 SSLLLSSINSNLSHNSIPQTSP-KRISQSSSFSFSL-------PPSSLPLSPKIDNHVIH 312

Query: 153 RIR 145
           +I+
Sbjct: 313 KIK 315


>Z68215-2|CAA92451.2|  452|Caenorhabditis elegans Hypothetical
           protein C53B4.2 protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 293 IAALSPLDARVKLFHSYLGLIPNLSQFTTSE 385
           I A SPLD + K+F   +   P LS++TT E
Sbjct: 189 IKATSPLDDKSKMFMDRIVKKPYLSKYTTKE 219


>Z50177-1|CAA90543.2|  607|Caenorhabditis elegans Hypothetical
           protein F46G10.2 protein.
          Length = 607

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 743 FPTSGHAPTNXXHFHSIKXXLNSLGFMIPGVGIVTLSGF 627
           + TSGH+ T     HS+   L ++ F+ P  G  T+  F
Sbjct: 7   YNTSGHSTTTVFISHSMLAVLTTVLFLAPATGADTVCSF 45


>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
           protein Y81G3A.3 protein.
          Length = 1696

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 350 LIPNLSQFTTSESAQAGVPQAPGKSKMERNSILRTGXSI 466
           LIP + + +  +S+   VP  PGK K+ +   L+TG S+
Sbjct: 561 LIPIVEETSDDDSSLGAVP-IPGKEKIGKKGKLKTGKSL 598


>AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical
           protein F32D1.7 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 368 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSP 261
           G GSGS  D +G + P+R +  +P +     PR  P
Sbjct: 159 GSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPP 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,681,044
Number of Sequences: 27780
Number of extensions: 424236
Number of successful extensions: 1115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)