Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0118
(775 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.8
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.8
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 1.8
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 4.2
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 4.2
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 7.3
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 21 9.6
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 21 9.6
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 21 9.6
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 21 9.6
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 21 9.6
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 9.6
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 21 9.6
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 9.6
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 21 9.6
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 9.6
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 242 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 150
LSIS L L +FFL+ + P ++ +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 242 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 150
LSIS L L +FFL+ + P ++ +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 242 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 150
LSIS L L +FFL+ P ++ +G
Sbjct: 274 LSISILLSLTVFFLLLAEIIPPTSLVVPLLG 304
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.6 bits (46), Expect = 4.2
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -3
Query: 242 LSISTLSGLVLFFLMTLLAFPQPPIITSYIGSDSCGPVVSATWA---SFAALTLN*TDPL 72
LSIS L L +FFL+ P + +G +V T + + A L +N P+
Sbjct: 270 LSISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMVLVTLSVVVTIAVLNVNFRSPV 329
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.6 bits (46), Expect = 4.2
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 412 SWKIEDGAEFDTPDRLXYKFGPVASGSLEFDYRGPHN 522
SW + G EF D K+ + SG L GP +
Sbjct: 138 SWHTDQGEEFVPGDDYDGKYLVLPSGELHIRDVGPED 174
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.8 bits (44), Expect = 7.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 321 LASSGDNAAIPTNPKTTIFPSVK 253
+ASS N T TTI P VK
Sbjct: 949 VASSASNVTNVTTNLTTILPPVK 971
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 9.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 355 PEPFPVYY 378
P PFPVYY
Sbjct: 114 PVPFPVYY 121
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 9.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 355 PEPFPVYY 378
P PFPVYY
Sbjct: 114 PVPFPVYY 121
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 9.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 355 PEPFPVYY 378
P PFPVYY
Sbjct: 114 PVPFPVYY 121
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 9.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 355 PEPFPVYY 378
P PFPVYY
Sbjct: 114 PVPFPVYY 121
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 578 SSAVGRTHNL*FVIAG 625
S VGRTH + ++I G
Sbjct: 147 SGIVGRTHTVGYIIIG 162
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 9.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 355 PEPFPVYY 378
P PFPVYY
Sbjct: 347 PVPFPVYY 354
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 9.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 355 PEPFPVYY 378
P PFPVYY
Sbjct: 347 PVPFPVYY 354
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 9.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 355 PEPFPVYY 378
P PFPVYY
Sbjct: 347 PVPFPVYY 354
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 9.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 355 PEPFPVYY 378
P PFPVYY
Sbjct: 347 PVPFPVYY 354
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 9.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 355 PEPFPVYY 378
P PFPVYY
Sbjct: 336 PVPFPVYY 343
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,172
Number of Sequences: 438
Number of extensions: 5728
Number of successful extensions: 21
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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