Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0118
(775 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 32 0.49
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 32 0.49
At3g10100.1 68416.m01210 filament protein-related similar to YEA... 31 1.1
At4g20730.1 68417.m03013 filament protein-related similar to Cyt... 30 2.0
At2g04300.1 68415.m00422 leucine-rich repeat protein kinase, put... 29 2.6
At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing pro... 29 3.4
At2g47180.1 68415.m05892 galactinol synthase, putative similar t... 29 3.4
At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family... 29 4.5
At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplas... 29 4.5
At5g47800.1 68418.m05904 phototropic-responsive NPH3 family prot... 28 6.0
At5g23790.1 68418.m02793 galactinol synthase, putative similar t... 28 6.0
At4g26250.1 68417.m03778 galactinol synthase, putative similar t... 28 6.0
At4g14840.1 68417.m02281 expressed protein 28 6.0
At5g50400.1 68418.m06242 calcineurin-like phosphoesterase family... 28 7.9
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 28 7.9
At1g09350.1 68414.m01046 galactinol synthase, putative contains ... 28 7.9
At1g07640.2 68414.m00820 Dof-type zinc finger domain-containing ... 28 7.9
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 31.9 bits (69), Expect = 0.49
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 14/137 (10%)
Frame = +1
Query: 31 ATDDNLQYQFFPVSSGSVQFKVRAANDAHVAL--TTGPQ------ESDPMYEVMIGGWGN 186
A D+L+++ G V F A ND V G Q ++ P Y V+IG N
Sbjct: 18 AWSDDLKFR--EAGRGCVAFDAFAHNDVTVVFRENVGTQHYHYKKDNSPHYIVIIGSNRN 75
Query: 187 AKSVIRKNRTKPDKVEIESPGILNGG-EYRGFWVRWDSGIISAGREGEAIPF----ISWS 351
+ I+ + V+ E+ + E++ +W+ G+IS G+ PF W
Sbjct: 76 RRLKIQVDGKSV--VDEEASDLCRCSLEFQSYWISIYDGLISIGK--GRYPFQNLVFKWQ 131
Query: 352 DPEP-FPVYYVGVCTGW 399
DP+P V YVG+ + W
Sbjct: 132 DPKPNCNVQYVGL-SSW 147
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 31.9 bits (69), Expect = 0.49
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 14/137 (10%)
Frame = +1
Query: 31 ATDDNLQYQFFPVSSGSVQFKVRAANDAHVAL--TTGPQ------ESDPMYEVMIGGWGN 186
A D+L+++ G V F A ND V G Q ++ P Y V+IG N
Sbjct: 18 AWSDDLKFR--EAGRGCVAFDAFAHNDVTVVFRENVGTQHYHYKKDNSPHYIVIIGSNRN 75
Query: 187 AKSVIRKNRTKPDKVEIESPGILNGG-EYRGFWVRWDSGIISAGREGEAIPF----ISWS 351
+ I+ + V+ E+ + E++ +W+ G+IS G+ PF W
Sbjct: 76 RRLKIQVDGKSV--VDEEASDLCRCSLEFQSYWISIYDGLISIGK--GRYPFQNLVFKWQ 131
Query: 352 DPEP-FPVYYVGVCTGW 399
DP+P V YVG+ + W
Sbjct: 132 DPKPNCNVQYVGL-SSW 147
>At3g10100.1 68416.m01210 filament protein-related similar to YEAST
NUF1 protein (Spindle poly body spacer protein SPC110)
(SP:P32380) {Saccharomyces cerevisiae}; similar to
Myosin heavy chain, smooth muscle isoform (SMMHC)
(SP:P35749) {Homo sapiens}
Length = 1004
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 362 LSQFTTSESAQAGVPQAPGKSKMERNSILRTGXSISLDLSPLVLWNS-ITADRTTATFPS 538
LSQF + P ++ E N+ L + DL P+V WN+ ITA +T +T S
Sbjct: 70 LSQFDPLIDLEDAYNTQPQYTEAEVNARLLHEDYVEFDLDPVVSWNTEITAKKTLSTTES 129
>At4g20730.1 68417.m03013 filament protein-related similar to
Cytadherence high molecular weight protein 2 (SP:P47460)
[Mycoplasma genitalium]; similar to YEAST NUF1
protein (Spindle poly body spacer protein SPC110)
(SP:P32380) {Saccharomyces cerevisiae}; also
SP|Q9UKX2|MYH2_HUMAN Myosin heavy chain, skeletal
muscle, SP|P31732|OV71_ONCVO Muscle cell intermediate
filament protein SP|P12882|MYH1_HUMAN Myosin heavy
chain, skeletal muscle,. SP|Q17107|AV71_ACAVI Muscle
cell intermediate filament protein
Length = 800
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 362 LSQFTTSESAQAGVPQAPGKSKMERNSILRTGXSISLDLSPLVLWNS-ITADRTTATFPS 538
L+QF + P ++ E N+ L + DL P+V WN+ ITA +T +T S
Sbjct: 71 LAQFDPLIDLEDAYNTQPQYTEAEVNARLLHEDHVEFDLDPVVSWNTEITAKKTLSTTES 130
>At2g04300.1 68415.m00422 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 851
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 148 DPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVRWDSGIISAG 315
D ++ + +G ++S + T+ D V +PG L+ YR W+ S + S G
Sbjct: 675 DEHFQAKLADFGLSRSFPLEGETRVDTVVAGTPGYLDPEYYRTNWLNEKSDVYSFG 730
>At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing
protein similar to meiotic asynaptic mutant 1
[Arabidopsis thaliana] GI:7939627, aysnaptic 1 [Brassica
oleracea var. alboglabra] GI:23506946; contains Pfam
profile PF02301: HORMA domain
Length = 1399
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 362 LSQFTTSESAQAGVPQAPGKSKMERNSILRTGXSISLDLSPLVLWNS-ITADRTTATFPS 538
L+QF + P ++ E N+ L + DL P+V WN+ ITA +T +T S
Sbjct: 662 LAQFDPLIDLEDAYNTQPQYTEAEVNARLLHEDHVEFDLVPVVSWNTEITAKKTLSTTES 721
>At2g47180.1 68415.m05892 galactinol synthase, putative similar to
galactinol synthase, isoform GolS-1 GI:5608497 from
[Ajuga reptans]
Length = 344
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 589 WENT-QSVIRYCRQKPDKVTIPTPGIMNP 672
W +T Q IRYC+Q PDKV P + P
Sbjct: 159 WSHTPQYKIRYCQQCPDKVQWPKAELGEP 187
>At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 300
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 368 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPG 243
G G S++D+N P P + P +TQ+ Y P + PG
Sbjct: 16 GPGQNSERDIN--QPPPPPPQSQPPPPQTQQQTYPPVMGYPG 55
>At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplasmic
/ asparagine-tRNA ligase 2 (SYNC2) nearly identical to
SP|Q9SW95; HMM hit: tRNA synthetases class II
Length = 638
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 163 VMIGGWGNAKSVIRKNRTKPDKVEIESPGILNGGE 267
V+IGGW + ++KN P + +P +GG+
Sbjct: 50 VVIGGWVKSARAVKKNSPPPPLPVVAAPSPSSGGD 84
>At5g47800.1 68418.m05904 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 559
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 377 TSESAQAGVPQAPGKSKMERNSILRTGXSISLDLSPLVLWNS-ITADRTTATFPSQLI 547
TSE + + PG +K + +S+ R + + L L+ ITA R+T T P QLI
Sbjct: 174 TSEVSWSHTYTRPGYAKRQHHSVPRDWWTEDISDLDLDLFRCVITAARSTFTLPPQLI 231
>At5g23790.1 68418.m02793 galactinol synthase, putative similar to
galactinol synthase, isoform GolS-1 GI:5608497 from
[Ajuga reptans]; contains Pfam profile: PF01501 glycosyl
transferase family 8
Length = 333
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 589 WENT-QSVIRYCRQKPDKVTIPTPGIMNP 672
W T Q I YC+Q P+KVT P + P
Sbjct: 151 WSKTPQYKIGYCQQSPEKVTWPVESLGAP 179
>At4g26250.1 68417.m03778 galactinol synthase, putative similar to
galactinol synthase, isoform GolS-1 [Ajuga reptans]
GI:5608497; contains Pfam profile: PF01501 glycosyl
transferase family 8
Length = 336
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 589 WENT-QSVIRYCRQKPDKVTIPTPGIMNP 672
W T Q I YC+Q P+KVT P + +P
Sbjct: 154 WSKTPQFKIGYCQQCPEKVTWPVESLGSP 182
>At4g14840.1 68417.m02281 expressed protein
Length = 555
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 266 NIVVFGFVGIAALS--PLDARVKLFHSYLGLIPNLSQFTTSESAQAGVPQAP 415
+I V G+ A+S P+D + F SYL + NL Q SE+ Q P
Sbjct: 294 HIYVSSMNGVIAVSHPPVDINPEEFDSYLNSLENLLQQQPSEAGQESSSSLP 345
>At5g50400.1 68418.m06242 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 611
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = +1
Query: 139 QESDPMYEVMIGGWGNAKSVIRKNRTK--PDKVEIESPGILNGGEYRGFWVRWDSGIISA 312
Q +D + + GG N V N K + P + G ++ V W SG
Sbjct: 135 QRADFSFALFTGGLSNPTLVSVSNHVSFINPKAPVY-PRLALGKKWDEMTVTWTSGY--- 190
Query: 313 GREGEAIPFISWS 351
GEA+PF+ WS
Sbjct: 191 -NIGEAVPFVEWS 202
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 314 PAEIMPLSQRTQKPRYSPPLRIP 246
P E+ P ++ P+YSPP+ +P
Sbjct: 171 PLELPPFLKKPCPPKYSPPVEVP 193
>At1g09350.1 68414.m01046 galactinol synthase, putative contains
Pfam profile: PF01501 glycosyl transferase family 8
Length = 334
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 589 WENT-QSVIRYCRQKPDKVTIP 651
W +T Q I YC+Q PDKVT P
Sbjct: 145 WSHTPQYKIGYCQQCPDKVTWP 166
>At1g07640.2 68414.m00820 Dof-type zinc finger domain-containing
protein identical to zinc finger protein OBP2 GI:5059394
from [Arabidopsis thaliana]
Length = 331
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 722 PTNXXHFHSIKXXLNSLGFMIPGVGIV 642
PTN H H ++ LN G +I G G+V
Sbjct: 2 PTNSNHQHHLQHQLNENGSIISGHGLV 28
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,097,900
Number of Sequences: 28952
Number of extensions: 410539
Number of successful extensions: 1181
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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