Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0116
         (848 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    50   2e-08
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    49   5e-08
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    46   3e-07
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   3.1  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   4.0  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   4.0  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   7.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   9.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.3  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   9.3  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   9.3  

>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 50.0 bits (114), Expect = 2e-08
 Identities = 33/80 (41%), Positives = 42/80 (52%)
 Frame = +3

Query: 579 INEPTAAAIAYGLDKKGYWRTKCTYL*PRRRYLSTCPSLPSKMVSFEVKSTXGDTHFGKX 758
           INEPTAAAIAYGLDKK   R +   +            L  +   FEVK+T GDTH G  
Sbjct: 1   INEPTAAAIAYGLDKKAE-RERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLG-G 58

Query: 759 XTLTIRMVNHFVQEFRRNSK 818
                R+V +  Q+F++  K
Sbjct: 59  EDFDNRLVEYCTQDFKKKHK 78


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 48.8 bits (111), Expect = 5e-08
 Identities = 32/80 (40%), Positives = 42/80 (52%)
 Frame = +3

Query: 579 INEPTAAAIAYGLDKKGYWRTKCTYL*PRRRYLSTCPSLPSKMVSFEVKSTXGDTHFGKX 758
           INEPTAAAIAYGLDKK   + +   +            L  +   FEVK+T GDTH G  
Sbjct: 1   INEPTAAAIAYGLDKKAE-KERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLG-G 58

Query: 759 XTLTIRMVNHFVQEFRRNSK 818
                R+V +  Q+F++  K
Sbjct: 59  EDFDNRLVEYCTQDFKKKHK 78



 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = +1

Query: 622 KKGTGERNVLIFDLGGGTF 678
           KK   ERNVLIFDLGGGTF
Sbjct: 15  KKAEKERNVLIFDLGGGTF 33



 Score = 27.5 bits (58), Expect = 0.14
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +2

Query: 677 FDVSILTIEDGIF 715
           FDVS+LTIE+GIF
Sbjct: 33  FDVSLLTIEEGIF 45


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 46.4 bits (105), Expect = 3e-07
 Identities = 29/80 (36%), Positives = 46/80 (57%)
 Frame = +3

Query: 579 INEPTAAAIAYGLDKKGYWRTKCTYL*PRRRYLSTCPSLPSKMVSFEVKSTXGDTHFGKX 758
           INEPTAAAIAYGLDKKG  +    Y      +  +  ++ + +  FEV +T GDTH G  
Sbjct: 1   INEPTAAAIAYGLDKKGAEQNILVYDLGGGTFDVSILTIDNGV--FEVVATSGDTHLG-G 57

Query: 759 XTLTIRMVNHFVQEFRRNSK 818
                +++++F++  ++  K
Sbjct: 58  EDFDQKVMDYFIKMVKQKHK 77


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 351 DGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKT 476
           D  KPKI+   + ED+    E+       K K T +  L KT
Sbjct: 241 DKDKPKIEDVGEDEDEDTKKEDKKKKKTIKEKYTEDEELNKT 282


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 534 TKDAGTISGLNVLRIINEPTAA 599
           TKDAG +S   +  ++N+P  A
Sbjct: 330 TKDAGLLSYPEICTLLNDPQNA 351


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = +2

Query: 422 FH-GAYENEGNCRSL---SWQNCA---ECSYHGSRVLQ*LSKTSHKRCR 547
           FH GA+  EG C+S    ++ N +   EC  +G  V+   ++T+ K CR
Sbjct: 15  FHFGAFTCEG-CKSFFGRTYNNISSISECKNNGECVINKKNRTACKACR 62


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 599 CDCLRS*QKRVLENEMYL 652
           CDC+RS   +V++N   L
Sbjct: 257 CDCVRSEASKVVKNAQKL 274


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 680 DVSILTIEDGIFRGEIHR 733
           D +I  I  G F+G+IHR
Sbjct: 75  DNTIEMIHRGTFQGDIHR 92


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 680 DVSILTIEDGIFRGEIHRRRHPLWEGXDF 766
           D S+L    G+ + E HRR   L E  DF
Sbjct: 252 DFSVLVEACGVLQQEPHRRDAFLKEVADF 280


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 680 DVSILTIEDGIFRGEIHRRRHPLWEGXDF 766
           D S+L    G+ + E HRR   L E  DF
Sbjct: 252 DFSVLVEACGVLQQEPHRRDAFLKEVADF 280


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/37 (27%), Positives = 14/37 (37%)
 Frame = +2

Query: 170 HFRLMLRSQXTERLIGRCRQEPGGDEPQQHNIRCQTS 280
           H + + +S  TE         P G  PQ  +    TS
Sbjct: 19  HHQQLFQSATTEAPAAYSSSSPSGSSPQHSSSSASTS 55


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/37 (27%), Positives = 14/37 (37%)
 Frame = +2

Query: 170 HFRLMLRSQXTERLIGRCRQEPGGDEPQQHNIRCQTS 280
           H + + +S  TE         P G  PQ  +    TS
Sbjct: 19  HHQQLFQSATTEAPAAYSSSSPSGSSPQHSSSSASTS 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,152
Number of Sequences: 336
Number of extensions: 4615
Number of successful extensions: 24
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)