Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0115
         (575 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   1.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.5  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   7.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.5  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.9  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 244 VHQTAIARNNPRKAVRS 294
           +HQT I  NNPR   R+
Sbjct: 46  IHQTVIYHNNPRDPNRA 62


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 270 VTGDGSLMHKHIF 232
           VTG+  +MH+H F
Sbjct: 3   VTGNLGIMHRHCF 15


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 358 GVTGPGGEPVKXSPYAADKRRGYHRQ 435
           GV GP G P   +    +   G+H Q
Sbjct: 147 GVLGPTGSPPLTTQSMNNHHMGHHMQ 172


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 381 ASKXLTLCCRQAPWLPPPIFP 443
           A + L LC R+ P  P P  P
Sbjct: 11  AGEVLDLCVRKRPHSPEPYPP 31


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 358 GVTGPGGEPVKXSPYAADKRRGYHRQ 435
           GV GP G P   +    +   G+H Q
Sbjct: 149 GVLGPTGSPPLTTQSMNNHHMGHHMQ 174


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 180 MVQRQEWIWFHQQE*HQGRCVCASDCHR 263
           MVQ  + + FH  E  +   +C + CHR
Sbjct: 147 MVQAIQVLRFHLLELEKVHELCDNFCHR 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,681
Number of Sequences: 336
Number of extensions: 1604
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)