Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0115
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0158 - 1103461-1104186 71 9e-13
08_01_0202 - 1638978-1639571 69 3e-12
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 29 2.7
06_03_1454 - 30261240-30261470,30261896-30262615,30262700-302628... 29 3.5
05_02_0119 + 6793292-6793613,6795793-6795952,6796416-6796458,679... 29 3.5
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 28 4.6
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 28 4.6
08_01_0229 + 1834102-1834358,1834442-1834901 28 6.1
09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327... 27 8.1
08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160 27 8.1
07_03_0595 + 19845631-19845972 27 8.1
>02_01_0158 - 1103461-1104186
Length = 241
Score = 70.5 bits (165), Expect = 9e-13
Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +1
Query: 154 AXKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 333
A + GTVKWFN G+GFI+ +D ED+FVHQ++I + RS+ +GE VEFA+
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD----GFRSLAEGEQVEFAISE 59
Query: 334 GEKG-FEAAGVTGPGGEPVK 390
E G +A VTGP G VK
Sbjct: 60 SEDGRTKAVDVTGPDGSFVK 79
>08_01_0202 - 1638978-1639571
Length = 197
Score = 68.9 bits (161), Expect = 3e-12
Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Frame = +1
Query: 160 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 339
+V GTVKWF+ G+GFI +D ED+FVHQ+++ + RS+ DG+ VEF+V +G
Sbjct: 5 RVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSD----GYRSLNDGDVVEFSVGSGN 60
Query: 340 KG-FEAAGVTGPGG 378
G +A VT PGG
Sbjct: 61 DGRTKAVDVTAPGG 74
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 304 GEAVEFAVVAGEKGFEAAGVTGPGGEP 384
GE+ E ++ GE E V GPGGEP
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEP 414
>06_03_1454 -
30261240-30261470,30261896-30262615,30262700-30262843,
30262953-30263204,30263542-30263751
Length = 518
Score = 28.7 bits (61), Expect = 3.5
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Frame = +1
Query: 148 VIAXKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 327
+I G V+ ++ G I +V VH+ AI NP S GD +V F
Sbjct: 146 IITCAADGQVRHSQIQEGGRVITNELVDTEVAVHKLAIEPGNPH-TFFSCGDNGSV-FLF 203
Query: 328 VAGEKG----FEAAGVTGPGGEPVKXSPYAADKRR 420
EK F+ A V GG+ ++ A D R+
Sbjct: 204 DLREKYVAELFKCAEVDHFGGDTIELYAIAIDPRK 238
>05_02_0119 +
6793292-6793613,6795793-6795952,6796416-6796458,
6797015-6797335
Length = 281
Score = 28.7 bits (61), Expect = 3.5
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Frame = +1
Query: 181 WFNVKSGYGF-INRNDTKEDVFVHQTAIARNNPRKAVRSVGDGE--------AVEFAVVA 333
W NV SG R +E V R +P +A + G E VA
Sbjct: 8 WINVSSGLDSGRQRGRRREGALVAWGGAQRTSPVEAAARMESGGWHRRTSMIVREELEVA 67
Query: 334 GE----KGFEAAGVTGPGGEPVKXSPYAADKRRG 423
G+ G EA G +GPGGE D RRG
Sbjct: 68 GDGRRASGVEAPGGSGPGGERTMAPANIDDSRRG 101
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 369 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHK 241
T N ++ FLP G + L + D ++ W ++ + SL HK
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHK 333
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +1
Query: 286 VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKXSP 399
VR G G A FAV G A G GGEP SP
Sbjct: 53 VRGGGGGGAALFAVPRLFVGLAAKRGAGDGGEPASRSP 90
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3
Query: 51 GVIGERRWWQRW 16
GV+GERR W+RW
Sbjct: 134 GVVGERRRWRRW 145
>09_02_0515 +
10121849-10122149,10132151-10132187,10132314-10132790,
10133184-10133733
Length = 454
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 151 IAXKVSGTVKWFNVKSGYGFINRNDTKE 234
+ V+ VKW +KSG F N KE
Sbjct: 191 LGISVAAAVKWLKIKSGQAFAVENYVKE 218
>08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160
Length = 749
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Frame = +1
Query: 247 HQTAIARNNPRKAVRSVGDGEA----VEFAVVAGEKGFEAAGVTGPGGEPVKXSPYAADK 414
HQ + P+ S DG A +E + G E+ G G GG P +
Sbjct: 29 HQQHQHQLPPQATTTSESDGRAPRDELEMSKSGGSDNLESGGGGGGGGSGGDQDPNQRPR 88
Query: 415 RRGYHR 432
++ YHR
Sbjct: 89 KKRYHR 94
>07_03_0595 + 19845631-19845972
Length = 113
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 520 GWAGVHDVXIXLCVELLHRXVRHLDEGNIGGGSHGA 413
G V +V I + + L +R L+EG+ GGG GA
Sbjct: 48 GGEKVTEVKIRITRKQLEELLRRLEEGSDGGGGGGA 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.134 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,514,517
Number of Sequences: 37544
Number of extensions: 208322
Number of successful extensions: 762
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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