Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0115
(575 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p pro... 163 1e-40
AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA... 163 1e-40
U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein ... 157 1e-38
AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p pro... 59 5e-09
AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding ... 59 5e-09
AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA... 59 5e-09
AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p pro... 32 0.48
AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB... 32 0.48
AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA... 32 0.48
>AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p
protein.
Length = 352
Score = 163 bits (397), Expect = 1e-40
Identities = 76/93 (81%), Positives = 83/93 (89%)
Frame = +1
Query: 148 VIAXKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 327
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AIARNNP+KAVRSVGDGE VEF V
Sbjct: 57 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116
Query: 328 VAGEKGFEAAGVTGPGGEPVKXSPYAADKRRGY 426
V GEKG EAA VTGP GEPV+ S +AADKRR +
Sbjct: 117 VIGEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149
>AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA
protein.
Length = 352
Score = 163 bits (397), Expect = 1e-40
Identities = 76/93 (81%), Positives = 83/93 (89%)
Frame = +1
Query: 148 VIAXKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 327
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AIARNNP+KAVRSVGDGE VEF V
Sbjct: 57 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116
Query: 328 VAGEKGFEAAGVTGPGGEPVKXSPYAADKRRGY 426
V GEKG EAA VTGP GEPV+ S +AADKRR +
Sbjct: 117 VIGEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149
>U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein
protein.
Length = 359
Score = 157 bits (381), Expect = 1e-38
Identities = 75/93 (80%), Positives = 82/93 (88%)
Frame = +1
Query: 148 VIAXKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 327
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AIA NNP+KAVRSVGDGE VEF V
Sbjct: 58 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIA-NNPKKAVRSVGDGEVVEFDV 116
Query: 328 VAGEKGFEAAGVTGPGGEPVKXSPYAADKRRGY 426
V GEKG EAA VTGP GEPV+ S +AADKRR +
Sbjct: 117 VIGEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149
>AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p
protein.
Length = 195
Score = 58.8 bits (136), Expect = 5e-09
Identities = 31/78 (39%), Positives = 42/78 (53%)
Frame = +1
Query: 169 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 348
G KWFNV G+GF+ ND ++VFVHQ+ I + RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96
Query: 349 EAAGVTGPGGEPVKXSPY 402
EA V+ G + S Y
Sbjct: 97 EATRVSSRHGGSCQGSTY 114
>AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding
protein LIN-28 protein.
Length = 195
Score = 58.8 bits (136), Expect = 5e-09
Identities = 31/78 (39%), Positives = 42/78 (53%)
Frame = +1
Query: 169 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 348
G KWFNV G+GF+ ND ++VFVHQ+ I + RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96
Query: 349 EAAGVTGPGGEPVKXSPY 402
EA V+ G + S Y
Sbjct: 97 EATRVSSRHGGSCQGSTY 114
>AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA
protein.
Length = 195
Score = 58.8 bits (136), Expect = 5e-09
Identities = 31/78 (39%), Positives = 42/78 (53%)
Frame = +1
Query: 169 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 348
G KWFNV G+GF+ ND ++VFVHQ+ I + RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96
Query: 349 EAAGVTGPGGEPVKXSPY 402
EA V+ G + S Y
Sbjct: 97 EATRVSSRHGGSCQGSTY 114
>AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p
protein.
Length = 143
Score = 32.3 bits (70), Expect = 0.48
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 163 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 261
V+G VK F+ G+GFI N EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87
>AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB,
isoform B protein.
Length = 143
Score = 32.3 bits (70), Expect = 0.48
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 163 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 261
V+G VK F+ G+GFI N EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87
>AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA,
isoform A protein.
Length = 143
Score = 32.3 bits (70), Expect = 0.48
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 163 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 261
V+G VK F+ G+GFI N EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.316 0.134 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,981,457
Number of Sequences: 53049
Number of extensions: 323521
Number of successful extensions: 1030
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2276053890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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