Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0115
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...   132   2e-31
U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box...    86   2e-17
U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box...    82   3e-16
Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical pr...    81   4e-16
AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical ...    81   4e-16
Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical pr...    53   2e-07
Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical pr...    53   2e-07
U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.       53   2e-07
U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.       53   2e-07
L11247-3|AAA28008.1|  278|Caenorhabditis elegans Collagen protei...    29   1.8  
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ...    27   7.2  

>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score =  132 bits (319), Expect = 2e-31
 Identities = 61/89 (68%), Positives = 68/89 (76%)
 Frame = +1

Query: 148 VIAXKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 327
           V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAI  NNP K +RS+GD E V F +
Sbjct: 16  VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75

Query: 328 VAGEKGFEAAGVTGPGGEPVKXSPYAADK 414
           V G KG EAA VTGP G PV+ S YAAD+
Sbjct: 76  VEGSKGLEAASVTGPDGGPVQGSKYAADR 104


>U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box
           protein 2 protein.
          Length = 267

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 43/85 (50%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
 Frame = +1

Query: 151 IAXKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFAV 327
           I   + G VKW++V   YGFI+RND ++D+FVHQTAIA++   K  +R++GD E V F +
Sbjct: 62  ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121

Query: 328 VAGEKGFEAAGVTGPGGEPVKXSPY 402
           V G+ G EAA VTGP G+ V  S Y
Sbjct: 122 VEGKNGPEAANVTGPNGDNVIGSRY 146


>U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box
           protein 3 protein.
          Length = 265

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
 Frame = +1

Query: 148 VIAXKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFA 324
           V+   + G VKW++V   YGFI+R+D ++DVFVHQTAI++++  K  +R++ D E V F 
Sbjct: 59  VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118

Query: 325 VVAGEKGFEAAGVTGPGGEPVKXSPY 402
           +V G+ G EAA VTGP G  V  S Y
Sbjct: 119 LVDGKNGPEAANVTGPAGVNVSGSKY 144


>Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 81.4 bits (192), Expect = 4e-16
 Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 4/90 (4%)
 Frame = +1

Query: 148 VIAXKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 315
           VI   V G VKWF+V+  YGF+ R+   D  ED FVHQTAI +++  K  +R++ D E V
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143

Query: 316 EFAVVAGEKGFEAAGVTGPGGEPVKXSPYA 405
            F +V G KG EAA VTGP GE V+ S +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173


>AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 81.4 bits (192), Expect = 4e-16
 Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 4/90 (4%)
 Frame = +1

Query: 148 VIAXKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 315
           VI   V G VKWF+V+  YGF+ R+   D  ED FVHQTAI +++  K  +R++ D E V
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143

Query: 316 EFAVVAGEKGFEAAGVTGPGGEPVKXSPYA 405
            F +V G KG EAA VTGP GE V+ S +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173


>Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical
           protein F02E9.2b protein.
          Length = 196

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
 Frame = +1

Query: 169 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 342
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 24  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79

Query: 343 GFEAAGVTGP-GGEPVKXS 396
           G EA  V+G   G+ +K S
Sbjct: 80  GREAYAVSGEVEGQGLKGS 98


>Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical
           protein F02E9.2a protein.
          Length = 227

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
 Frame = +1

Query: 169 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 342
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 343 GFEAAGVTGP-GGEPVKXS 396
           G EA  V+G   G+ +K S
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129


>U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.
          Length = 227

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
 Frame = +1

Query: 169 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 342
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 343 GFEAAGVTGP-GGEPVKXS 396
           G EA  V+G   G+ +K S
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129


>U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.
          Length = 227

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
 Frame = +1

Query: 169 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 342
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 343 GFEAAGVTGP-GGEPVKXS 396
           G EA  V+G   G+ +K S
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129


>L11247-3|AAA28008.1|  278|Caenorhabditis elegans Collagen protein
           91 protein.
          Length = 278

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 301 DGEAVEFAVVAGEKGFEA-AGVTGPGGEPVKXSPYAADKRRG 423
           DG A++FA  AG    +  AG  GP G P    P   D + G
Sbjct: 117 DGVAIQFASAAGGACIQCPAGEAGPAGAPGAPGPAGPDGQPG 158


>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 567 WYNASFLTLISLCTPLVGR 511
           W NASFLTL++   P++G+
Sbjct: 371 WQNASFLTLLNELEPVLGK 389


>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 567 WYNASFLTLISLCTPLVGR 511
           W NASFLTL++   P++G+
Sbjct: 371 WQNASFLTLLNELEPVLGK 389


>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
           protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 567 WYNASFLTLISLCTPLVGR 511
           W NASFLTL++   P++G+
Sbjct: 371 WQNASFLTLLNELEPVLGK 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,857,578
Number of Sequences: 27780
Number of extensions: 156150
Number of successful extensions: 480
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)