Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0115
(575 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 65 3e-11
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 60 1e-09
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 58 4e-09
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 56 2e-08
At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook pr... 30 0.96
At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook pr... 30 0.96
At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook pr... 30 0.96
At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to ... 27 6.8
At2g39650.1 68415.m04862 expressed protein contains Pfam profile... 27 9.0
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 65.3 bits (152), Expect = 3e-11
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +1
Query: 154 AXKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 333
A + +G V WFN GYGFI +D ++FVHQ++I + RS+ G+AVEFA+
Sbjct: 8 AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIV----SEGYRSLTVGDAVEFAITQ 63
Query: 334 GEKG-FEAAGVTGPGGEPVK 390
G G +A VT PGG +K
Sbjct: 64 GSDGKTKAVNVTAPGGGSLK 83
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 59.7 bits (138), Expect = 1e-09
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = +1
Query: 169 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 348
GTVKWF+ + G+GFI +D +D+FVHQ++I + RS+ E+VEF V G
Sbjct: 17 GTVKWFDTQKGFGFITPSDGGDDLFVHQSSIR----SEGFRSLAAEESVEFDVEVDNSGR 72
Query: 349 -EAAGVTGPGGEPVK 390
+A V+GP G PV+
Sbjct: 73 PKAIEVSGPDGAPVQ 87
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 58.0 bits (134), Expect = 4e-09
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = +1
Query: 169 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV-VAGEKG 345
G+VKWF+ + G+GFI +D +D+FVHQ++I + RS+ EAVEF V +
Sbjct: 13 GSVKWFDTQKGFGFITPDDGGDDLFVHQSSIR----SEGFRSLAAEEAVEFEVEIDNNNR 68
Query: 346 FEAAGVTGPGGEPVK 390
+A V+GP G PV+
Sbjct: 69 PKAIDVSGPDGAPVQ 83
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 56.0 bits (129), Expect = 2e-08
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 154 AXKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 333
A + G V WF+ GYGFI +D E++FVHQ++I + RS+ GE+VE+ +
Sbjct: 8 AARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSD----GFRSLTLGESVEYEIAL 63
Query: 334 GEKG-FEAAGVTGPGG 378
G G +A VT PGG
Sbjct: 64 GSDGKTKAIEVTAPGG 79
>At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 30.3 bits (65), Expect = 0.96
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 292 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKXSPYAADKRRGYHRQYFP 444
S G+ + + GE G G+TG G EPVK KRRG R+Y P
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108
>At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 30.3 bits (65), Expect = 0.96
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 292 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKXSPYAADKRRGYHRQYFP 444
S G+ + + GE G G+TG G EPVK KRRG R+Y P
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108
>At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 30.3 bits (65), Expect = 0.96
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 292 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKXSPYAADKRRGYHRQYFP 444
S G+ + + GE G G+TG G EPVK KRRG R+Y P
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108
>At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 294
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 260 SPVTTHVRLCARSATERRWSLPWL 331
+PV T VR+C + +TE SLP++
Sbjct: 26 APVPTFVRICKKKSTEGFQSLPYV 49
>At2g39650.1 68415.m04862 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 291
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -3
Query: 441 EILAVVATALVCSIR*AFYWLTTGTSNTSCFKAFLPGNHGKLHRLSVADRA 289
E+L+VV T ++ + + +GT N SC + +L KL RLS D A
Sbjct: 80 EVLSVVRTLMLTIKEKDLHSVKSGTCNASCIRFYL----AKLLRLSGYDAA 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.134 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,478,211
Number of Sequences: 28952
Number of extensions: 148389
Number of successful extensions: 467
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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