Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0114
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    27   4.2  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   5.6  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    26   5.6  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   7.4  

>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 504 VILCQIFITNTVKPG*VRTG*VRKL 578
           V+   +FI  TVKPG +R   +RK+
Sbjct: 220 VLSILVFIAETVKPGSIRVNLIRKM 244


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 509 TVSNIHNKYSQTWVSENWISEKTL*VRVIARTRHFK 616
           T+ N+  KY   W+   ++S  +L   V  +TR+++
Sbjct: 823 TIQNVEQKYQVEWLPRPFLSIPSLESSVKGKTRYYE 858


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 519 IFITNTVKPG*VRTG*VRKL 578
           +FI  TVKPG +R   +RK+
Sbjct: 214 VFIAETVKPGSIRVNLIRKM 233


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 421 IMTKVCNQI*RSAYNSN*HYKCCDLC 498
           I+ K+C+++ + A  S  H+  C LC
Sbjct: 709 IVCKICDEVAQDAIESRCHHTFCRLC 734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,109
Number of Sequences: 5004
Number of extensions: 56360
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)