Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0114
         (816 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR...    28   8.5  
At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG...    28   8.5  

>At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1039

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 49  SHLSRETVYSGWDANAFR*PLYP*K 123
           SHLS +T   GW+   FR   YP K
Sbjct: 389 SHLSEQTTIEGWEDELFRLEDYPQK 413


>At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG-N)
           family protein similar to phosphatidylinositolglycan
           class N short form GB:BAA82620 [gi:5631308] [Mus
           musculus]
          Length = 921

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -2

Query: 431 FVIISRSLFRLFG*FWLTKCSFQRV-KMLHIKKIGRLIL*VTCDLFSDIL 285
           F++ +  +F+LF  F L  C+F  + K++ + ++G   L +   LFSDI+
Sbjct: 813 FLMAALLIFKLFIPFMLVICAFSAITKLVRVPRLGCYFLVI---LFSDIM 859


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,625
Number of Sequences: 28952
Number of extensions: 269189
Number of successful extensions: 489
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)