Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0112
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.8  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   7.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.6  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 633 VSLSPLPAVEQGWEHPHIGVAHVRYLRTHVE 541
           V  S  PA+ +GW+   I   ++  LR +V+
Sbjct: 463 VIFSERPALIEGWKVEKIQEIYLEALRAYVD 493


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 40  PPTAGPASQSPSS 2
           P T GP SQ+P+S
Sbjct: 92  PGTPGPLSQAPAS 104


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 136 SVFNLSGGNERVNTYGDWFGYHTNPRAKIFKQKQSEIHNLRDMYRTM 276
           S  ++SGG  ++  Y   +   T+  A       S  H L+D Y++M
Sbjct: 197 SWLDMSGGMHQMANYSTDYSSLTHSLAASNHLLSSGQHLLQDTYKSM 243


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 40  PPTAGPASQSPSS 2
           P T GP SQ+P+S
Sbjct: 248 PGTPGPLSQAPAS 260


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,416
Number of Sequences: 336
Number of extensions: 3695
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)