Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0112
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.51 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    29   0.89 
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    29   0.89 
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    27   2.7  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    26   4.7  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   6.3  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   6.3  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    25   8.3  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 70   PPLCIPVAAQPPTAGPASQSPS 5
            PP+ +P A  PP   P+S++PS
Sbjct: 1227 PPVPVPTAKAPPVPAPSSEAPS 1248


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 109 PSYNIAYFPSVFNLSGGNERVNTYGDWFGYHTNPRAKIFKQKQSEIHNLRDMYRTMRYND 288
           P   +A    +F  S  N+  N Y  WF  H N R ++  +   + H   D ++++  N 
Sbjct: 50  PKLQVAVRECLFLFSFQND--NEYLVWFKKHLNERLQLCPKCIVKYHQSLDDFKSLCLNI 107

Query: 289 YRHDP 303
           +  DP
Sbjct: 108 FHFDP 112


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 17/83 (20%), Positives = 40/83 (48%)
 Frame = +1

Query: 40  VEQLPGYTEAADITEELKQTSYFPSYNIAYFPSVFNLSGGNERVNTYGDWFGYHTNPRAK 219
           + ++  + +   + E+ +  ++F   N+++ P + ++      +N Y DW  Y+ NP+  
Sbjct: 7   IARIQAFRKQVPLVEKNENITFF---NLSFQPPMNSIVANT--INEYVDWGLYNPNPK-P 60

Query: 220 IFKQKQSEIHNLRDMYRTMRYND 288
           +++QK  E   L   Y     +D
Sbjct: 61  LWQQKAEETRELVAKYLNASSSD 83


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 655 SSLLLTVREPIPTPSGGAGVGTSTHRGGPRE 563
           SS   TVREP+P P   +G      R  P E
Sbjct: 259 SSYAPTVREPVPVPKSNSGFRFPFMRNKPAE 289


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 85  ELKQTSYFPSYNIAYFPSVFNLSGGNERVN 174
           +  + +YF SYN+ Y  S+   + GN+  N
Sbjct: 359 QYSRIAYFYSYNVVYEASIQTATDGNDFAN 388


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 122 MLYEGKYDVCFSSSVISAASVYPGSCSTTHSRP 24
           +LY G+ DV F S   +    +   C T ++RP
Sbjct: 239 LLYSGENDVHFPSLTTAETLDFAAKCRTPNNRP 271


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +1

Query: 88   LKQTSYFPSYNIAYFPSVFNLSGGNERVNTYGDWFGYHTNPRAK 219
            LK  S+F  Y   ++  +   +  +ER+ +Y     +H N  +K
Sbjct: 927  LKNGSHFEGYERVFYELLLRYTYSDERIESYPSDSRFHFNSSSK 970


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 439 KITSSLLXKTYQ-FIAVSSPTYNLSRGVPPF 528
           K  + L  K YQ  I+  SP Y+LS+ +P F
Sbjct: 89  KTLNQLHTKLYQQMISSGSPVYSLSQSLPAF 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,130
Number of Sequences: 5004
Number of extensions: 55310
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)