Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0112
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1201 + 9678893-9679311,9679415-9679721                           31   0.70 
12_02_1086 - 25946501-25946632,25947140-25947385,25947510-25948193     30   1.6  
06_01_0015 + 181155-181323,182074-182195,182425-182449,182664-18...    29   3.7  
02_05_0570 + 30070338-30071606                                         29   3.7  
11_02_0048 - 7737479-7737973,7742487-7742745,7743037-7743095           29   4.9  
09_06_0171 - 21308993-21309671,21309768-21309862,21309944-213100...    29   4.9  
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302...    29   4.9  
01_01_0601 - 4476261-4476728                                           29   4.9  
02_04_0557 + 23865202-23865437,23865469-23865997                       28   6.5  
01_05_0327 + 20984336-20985478                                         28   8.6  

>01_01_1201 + 9678893-9679311,9679415-9679721
          Length = 241

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 670 IQNXSSSLLLTVREPIPTP-SGGAGVGTSTHRGGPRE 563
           +Q  + SLL  VR+ IP P SGGAG G +   G   E
Sbjct: 42  VQESARSLLGAVRDKIPGPGSGGAGAGAAAGEGKAAE 78


>12_02_1086 - 25946501-25946632,25947140-25947385,25947510-25948193
          Length = 353

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 540 LTPNEGWHPPGQVVGGARHGYE-LVSLXEQRARDLRVGGSVTAMSQGSER 394
           L P  GWH P   + G + G E L+ L E  +  L+ GG     + G+++
Sbjct: 267 LQPEVGWHEPKLALDGGKDGLEHLLHLCEGLSSVLKPGGFFVFETNGNKQ 316


>06_01_0015 +
           181155-181323,182074-182195,182425-182449,182664-182828,
           183203-183321
          Length = 199

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 497 PTTCPGGCHP-SFGVSSTWVRRYLTWATPMC 586
           P  C   C P S  +SS W RR LT A P C
Sbjct: 10  PPPCVATCTPPSPSLSSQWRRRRLTLAQPYC 40


>02_05_0570 + 30070338-30071606
          Length = 422

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = -2

Query: 655 SSLLLTVREPIPT---PSGGAGVGTSTHRGGPREISADPCRTYSKRRVAPPWTSCR 497
           S LLLT+  P  +   PS G G G     GG R    DP   Y+  R    W   R
Sbjct: 24  SVLLLTLASPFSSSSSPSSGVGSGEVDRLGGGRTFYDDPGVAYTIDRPIVGWDEKR 79


>11_02_0048 - 7737479-7737973,7742487-7742745,7743037-7743095
          Length = 270

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 497 PTTCPGGCHPSFGVSSTWVRRYLTWATPMC 586
           PT+ P  C  S+ +S   ++RY+++A+  C
Sbjct: 9   PTSSPSVCSRSWSISEDSLKRYVSYASESC 38


>09_06_0171 -
           21308993-21309671,21309768-21309862,21309944-21310084,
           21310177-21310348,21310445-21310548,21311254-21311370
          Length = 435

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 408 GTSQSRSHRREDHELAAXEDLPVHSRVEPHLQLVQGGATLRLE*VRHG 551
           G+  S    +E+HEL       + SRV P++ L     T R E ++ G
Sbjct: 385 GSRHSEDEEKENHELPDLPKANLSSRVHPNMPLDYETLTARFEALKSG 432


>01_07_0213 -
           42028941-42029055,42029444-42029480,42029876-42030244,
           42030332-42031201,42051574-42052891
          Length = 902

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 570 GPPRCVDVPTPAPPLGVG 623
           G P+C  VP+P+ P GVG
Sbjct: 157 GSPQCAQVPSPSCPAGVG 174


>01_01_0601 - 4476261-4476728
          Length = 155

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 613 SGGAGVGTSTHRGGPREISADPCRTYSKRRVA 518
           +G AG G + HRG  R ++ D  R   +RR A
Sbjct: 34  TGTAGAGPTDHRGRRRAVTGDGGRHRERRRAA 65


>02_04_0557 + 23865202-23865437,23865469-23865997
          Length = 254

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = -2

Query: 712 SLI*SXLSTKTCMYIQNXSSSLLLTVREPIPTPSGGAGVGTSTHRGGP 569
           SL  S       +Y++    SL LT   P P P G AG   S   G P
Sbjct: 161 SLAASACGIAAYVYVEADGESLTLTPTTPPPRPGGFAGAPGSATGGQP 208


>01_05_0327 + 20984336-20985478
          Length = 380

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
 Frame = +1

Query: 385 GTYPFRALG-HRSHGATDA---------KITSSLLXKTYQFIAVSSPTYNLSRGVP 522
           GT+ FR  G H  HGA ++         ++   LL     F+  S P Y+LSR  P
Sbjct: 246 GTFHFRTGGMHHGHGAQNSGGSTLRMLIQLLPVLLLLLLNFLPSSEPVYSLSRSYP 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,324,025
Number of Sequences: 37544
Number of extensions: 470598
Number of successful extensions: 1895
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1890
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)