Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0112
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.7  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   8.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.9  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   8.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 531 NEGWHPPGQVVGGARHG 481
           N GW  P ++VGG   G
Sbjct: 152 NCGWKNPSRIVGGTNTG 168


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 538  YSKRRVAPPW 509
            Y KRR  PPW
Sbjct: 990  YGKRRKEPPW 999


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 180 RRLVRLPHQSQGEDIQAETE*DPQSPRH 263
           R LV  P   +G+D Q +    P+S  H
Sbjct: 681 RELVDAPADQEGDDDQVDEREYPESHGH 708


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 552 SADISRGPPRCVDVPTPAPP 611
           SAD+   P   +DVP   PP
Sbjct: 44  SADLVPEPRYIIDVPPRCPP 63


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 253 LRDMYRTMRYNDY 291
           L +MYRTM  N+Y
Sbjct: 706 LSNMYRTMEANNY 718


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 552 SADISRGPPRCVDVPTPAPP 611
           SAD+   P   +DVP   PP
Sbjct: 44  SADLVPEPRYIIDVPPRCPP 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,275
Number of Sequences: 438
Number of extensions: 4042
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)