Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0111
(454 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0) 141 2e-34
SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08) 69 2e-12
SB_16470| Best HMM Match : EGF (HMM E-Value=1.7e-06) 42 3e-04
SB_28421| Best HMM Match : Oxysterol_BP (HMM E-Value=4.5e-11) 37 0.007
SB_17486| Best HMM Match : CheR (HMM E-Value=3.2) 27 7.3
SB_54893| Best HMM Match : CheR (HMM E-Value=3.2) 27 7.3
SB_16126| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_4580| Best HMM Match : Pirin (HMM E-Value=4.1e-06) 27 9.6
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0) 27 9.6
>SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)
Length = 926
Score = 141 bits (342), Expect = 2e-34
Identities = 76/159 (47%), Positives = 92/159 (57%), Gaps = 10/159 (6%)
Frame = +3
Query: 3 KLWVDNHGDXDIVGDAGPATGYVAHLKYLPYGYFSKDTQRKVTGVVKDPNGVPRYVLQGH 182
KLW+D G+ DI A T HLKY Y YF +DT RKVTGVV D RYV+ G
Sbjct: 705 KLWIDQSGEMDI---ANHTTNENCHLKYDAYNYFGRDTPRKVTGVVTDSTKTVRYVISGT 761
Query: 183 WDSRVEVAPVT-----STSADNSVCKTGKF-----VTAWQRVAAPPDSDKWYNFTVLAAQ 332
WD+++E A V A S + G+ V W+RV PP+++K Y T A
Sbjct: 762 WDNKIEAAKVVYLKSPGVKAQGSSSQKGQPQTLPPVVLWKRVLPPPENEKMYAMTSFAIT 821
Query: 333 LNEPEPGVAPTDSRLRPDQRLMXEGCWDEANTEKLRLEE 449
LNEPE VAPTDSR RPDQRLM W+EAN EKLR+E+
Sbjct: 822 LNEPEDHVAPTDSRFRPDQRLMENCHWEEANQEKLRIED 860
>SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08)
Length = 836
Score = 68.5 bits (160), Expect = 2e-12
Identities = 49/153 (32%), Positives = 70/153 (45%), Gaps = 22/153 (14%)
Frame = +3
Query: 57 ATGYVAHLKYLPYGYFSKDTQRKVTGVVKDPNGVPRYVLQGHWDSRV------------- 197
++G A + + P G+F K+ + + + RY L+G W ++
Sbjct: 304 SSGDRATIHFKPAGWFGKELNKVEATIHCAQDKKKRYTLKGDWTDKITCYRSETHVTRKQ 363
Query: 198 -----EVAPVTSTSADNSVCKTGKFVTAWQRVAAPPDSDKWYNFTVLAAQLNEPEPG--- 353
+ + STS+ + + VT W PP S + YNFT A QLNE P
Sbjct: 364 SKRGKQDFEIASTSSSETSLELHSPVTLWTCSHRPPHSKEMYNFTSFAMQLNELLPRDKE 423
Query: 354 -VAPTDSRLRPDQRLMXEGCWDEANTEKLRLEE 449
+ PTDSRLRPD R + G D A EK+RLEE
Sbjct: 424 TLPPTDSRLRPDCRALENGDLDRATAEKIRLEE 456
>SB_16470| Best HMM Match : EGF (HMM E-Value=1.7e-06)
Length = 484
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/30 (63%), Positives = 21/30 (70%)
Frame = +3
Query: 360 PTDSRLRPDQRLMXEGCWDEANTEKLRLEE 449
PTDSRLRPD R + G D A EK+RLEE
Sbjct: 3 PTDSRLRPDCRALENGDLDRATAEKIRLEE 32
>SB_28421| Best HMM Match : Oxysterol_BP (HMM E-Value=4.5e-11)
Length = 378
Score = 37.1 bits (82), Expect = 0.007
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 126 VTGVVKDPNGVPRYVLQGHWDSRVEVAP 209
+ G VKDP G RYV++G WD +E P
Sbjct: 211 IPGEVKDPEGKVRYVIEGSWDKSLECIP 238
>SB_17486| Best HMM Match : CheR (HMM E-Value=3.2)
Length = 1177
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 146 SQRRAEVRATRSLGQPRGGG 205
SQRR R TRS+G +GGG
Sbjct: 179 SQRRKGARITRSVGCSKGGG 198
>SB_54893| Best HMM Match : CheR (HMM E-Value=3.2)
Length = 537
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 146 SQRRAEVRATRSLGQPRGGG 205
SQRR R TRS+G +GGG
Sbjct: 179 SQRRKGARITRSVGCSKGGG 198
>SB_16126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 26.6 bits (56), Expect = 9.6
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Frame = -1
Query: 373 RESVGATPGSGSLSCAASTVKLYHLSESGGAATRCHAVTNLPVLQTELSADVLVTG--AT 200
++SVG T + + +A L+H +S C + LP + L+ + G +
Sbjct: 936 KQSVGRTIDIMTTNDSAGAAVLHHFLDSPSPPPACGSFVRLPDDNSNLTRSCMKWGLAGS 995
Query: 199 STRLSQ*PCSTYLGTPLGSLTTPVT-FRCVSLLKYP*G-RYLRCATY 65
T +++ S YLG P P+ F S + G +Y RC Y
Sbjct: 996 QTMVNRWSRSDYLG-PARIFADPIVWFGARSFNAHLNGPKYPRCDDY 1041
>SB_4580| Best HMM Match : Pirin (HMM E-Value=4.1e-06)
Length = 336
Score = 26.6 bits (56), Expect = 9.6
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = -1
Query: 349 GSGSLSCAASTVKLYHLSESGGAATRCHAVTNLPVLQTELSADVLVTGATSTRLSQ*PCS 170
G +LS T+K+ + S G T +V L LSA V A LS C+
Sbjct: 65 GVCTLSAGVCTLKVGVCTLSAGVCTLSASVCTLSASVCTLSAGVCTLSAGVCTLSASVCT 124
Query: 169 TYLG 158
Y G
Sbjct: 125 LYAG 128
>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
Length = 2007
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = -3
Query: 428 RVGLVPAALXHEALVGAQPRVGGRDAGLGLVELRGEHGEVVPLVGVGRGGHALPRRHELA 249
RVG+ L GA R+G A G V GE+ L G+ G +P+R L
Sbjct: 1563 RVGVKVPQFSFSRLAGADARLGVEMASTGEVACFGENRYEAFLKGLLSTGFRIPKRSILL 1622
Query: 248 GL 243
+
Sbjct: 1623 SI 1624
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,948,095
Number of Sequences: 59808
Number of extensions: 219871
Number of successful extensions: 654
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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