Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0111
         (454 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    27   0.31 
AY280613-1|AAQ21366.1|  257|Anopheles gambiae carbonic anhydrase...    23   3.8  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    22   8.8  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 27.1 bits (57), Expect = 0.31
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 367 SVGATPGSGSLSCAASTVKLYHLSESGGAATRCHAVTN 254
           + GAT  SGS + A S   + + S SG A T     TN
Sbjct: 110 NTGATVNSGSSNAALSNSSVLNGSNSGSATTTTTTPTN 147



 Score = 22.2 bits (45), Expect = 8.8
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -1

Query: 364  VGATPGSGSLSCAASTVKLYHLSESGGAATRCHAVTN 254
            VG   G GS   A ST+     S S       H+ TN
Sbjct: 947  VGGGGGGGSAGGAGSTISNNTNSSSSSGKKSSHSGTN 983


>AY280613-1|AAQ21366.1|  257|Anopheles gambiae carbonic anhydrase
           alternate isoform protein.
          Length = 257

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -1

Query: 250 PVLQTELSADVLVTGATSTRLSQ*PCSTYLGTPLGSLTTPVTFRCVSLLKY 98
           P  QTE+ AD L        +     + +  T  GSLTTP  F  V+ L Y
Sbjct: 155 PDAQTEIDADCLAW------MGMQELNRHYYTYKGSLTTPPYFESVTWLVY 199


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 377 QPRVGGRDAGLGLVELRGEHGE 312
           QP   GRD   G V L G+ G+
Sbjct: 345 QPGPRGRDGNFGPVGLPGQKGD 366


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 364,771
Number of Sequences: 2352
Number of extensions: 7216
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 38694201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)