Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0111
(454 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117202-30|CAO82060.1| 449|Caenorhabditis elegans Hypothetical... 154 2e-38
AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical... 154 2e-38
AL117202-15|CAC42376.1| 627|Caenorhabditis elegans Hypothetical... 154 2e-38
AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical... 154 2e-38
Z81061-1|CAB02934.3| 436|Caenorhabditis elegans Hypothetical pr... 42 2e-04
U28738-8|AAA68313.1| 126|Caenorhabditis elegans Small nuclear r... 29 1.6
Z66515-11|CAA91354.1| 858|Caenorhabditis elegans Hypothetical p... 29 2.1
Z48178-10|CAA88206.1| 858|Caenorhabditis elegans Hypothetical p... 29 2.1
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 2.1
Z66515-12|CAC42333.1| 860|Caenorhabditis elegans Hypothetical p... 27 4.8
Z48178-11|CAC42247.1| 860|Caenorhabditis elegans Hypothetical p... 27 4.8
U00042-1|AAA50674.1| 456|Caenorhabditis elegans Hypothetical pr... 27 4.8
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 8.4
>AL117202-30|CAO82060.1| 449|Caenorhabditis elegans Hypothetical
protein Y47D3A.17d protein.
Length = 449
Score = 154 bits (374), Expect = 2e-38
Identities = 74/153 (48%), Positives = 102/153 (66%), Gaps = 4/153 (2%)
Frame = +3
Query: 3 KLWVDNHGDXDIVGDAGPATGYVAHLKYLPYGYFSKDTQRKVTGVVKDPNGVPRYVLQGH 182
KLW+DNHGD +I T LK++PY YFS++ RKV G+V+D G+P+YV+QG
Sbjct: 234 KLWIDNHGDMEITNHE---TNEKCLLKFVPYSYFSREQPRKVYGIVRDAEGIPKYVVQGT 290
Query: 183 WDSRVEVAPVTSTSADNSVCKTGKFVTAWQRV----AAPPDSDKWYNFTVLAAQLNEPEP 350
WD +++ V+S + ++ K T+ +R+ P +++K +NFT LA +LNEPE
Sbjct: 291 WDKSIDMLKVSSWNGNHEKPKLEVDETSLKRIWTANPLPKNAEKMHNFTKLAIELNEPEE 350
Query: 351 GVAPTDSRLRPDQRLMXEGCWDEANTEKLRLEE 449
GVAPTDSRLRPDQRLM G WDEAN +KL +EE
Sbjct: 351 GVAPTDSRLRPDQRLMENGEWDEANRKKLEIEE 383
>AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical
protein Y47D3A.17c protein.
Length = 842
Score = 154 bits (374), Expect = 2e-38
Identities = 74/153 (48%), Positives = 102/153 (66%), Gaps = 4/153 (2%)
Frame = +3
Query: 3 KLWVDNHGDXDIVGDAGPATGYVAHLKYLPYGYFSKDTQRKVTGVVKDPNGVPRYVLQGH 182
KLW+DNHGD +I T LK++PY YFS++ RKV G+V+D G+P+YV+QG
Sbjct: 627 KLWIDNHGDMEITNHE---TNEKCLLKFVPYSYFSREQPRKVYGIVRDAEGIPKYVVQGT 683
Query: 183 WDSRVEVAPVTSTSADNSVCKTGKFVTAWQRV----AAPPDSDKWYNFTVLAAQLNEPEP 350
WD +++ V+S + ++ K T+ +R+ P +++K +NFT LA +LNEPE
Sbjct: 684 WDKSIDMLKVSSWNGNHEKPKLEVDETSLKRIWTANPLPKNAEKMHNFTKLAIELNEPEE 743
Query: 351 GVAPTDSRLRPDQRLMXEGCWDEANTEKLRLEE 449
GVAPTDSRLRPDQRLM G WDEAN +KL +EE
Sbjct: 744 GVAPTDSRLRPDQRLMENGEWDEANRKKLEIEE 776
>AL117202-15|CAC42376.1| 627|Caenorhabditis elegans Hypothetical
protein Y47D3A.17b protein.
Length = 627
Score = 154 bits (374), Expect = 2e-38
Identities = 74/153 (48%), Positives = 102/153 (66%), Gaps = 4/153 (2%)
Frame = +3
Query: 3 KLWVDNHGDXDIVGDAGPATGYVAHLKYLPYGYFSKDTQRKVTGVVKDPNGVPRYVLQGH 182
KLW+DNHGD +I T LK++PY YFS++ RKV G+V+D G+P+YV+QG
Sbjct: 412 KLWIDNHGDMEITNHE---TNEKCLLKFVPYSYFSREQPRKVYGIVRDAEGIPKYVVQGT 468
Query: 183 WDSRVEVAPVTSTSADNSVCKTGKFVTAWQRV----AAPPDSDKWYNFTVLAAQLNEPEP 350
WD +++ V+S + ++ K T+ +R+ P +++K +NFT LA +LNEPE
Sbjct: 469 WDKSIDMLKVSSWNGNHEKPKLEVDETSLKRIWTANPLPKNAEKMHNFTKLAIELNEPEE 528
Query: 351 GVAPTDSRLRPDQRLMXEGCWDEANTEKLRLEE 449
GVAPTDSRLRPDQRLM G WDEAN +KL +EE
Sbjct: 529 GVAPTDSRLRPDQRLMENGEWDEANRKKLEIEE 561
>AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical
protein Y47D3A.17a protein.
Length = 766
Score = 154 bits (374), Expect = 2e-38
Identities = 74/153 (48%), Positives = 102/153 (66%), Gaps = 4/153 (2%)
Frame = +3
Query: 3 KLWVDNHGDXDIVGDAGPATGYVAHLKYLPYGYFSKDTQRKVTGVVKDPNGVPRYVLQGH 182
KLW+DNHGD +I T LK++PY YFS++ RKV G+V+D G+P+YV+QG
Sbjct: 551 KLWIDNHGDMEITNHE---TNEKCLLKFVPYSYFSREQPRKVYGIVRDAEGIPKYVVQGT 607
Query: 183 WDSRVEVAPVTSTSADNSVCKTGKFVTAWQRV----AAPPDSDKWYNFTVLAAQLNEPEP 350
WD +++ V+S + ++ K T+ +R+ P +++K +NFT LA +LNEPE
Sbjct: 608 WDKSIDMLKVSSWNGNHEKPKLEVDETSLKRIWTANPLPKNAEKMHNFTKLAIELNEPEE 667
Query: 351 GVAPTDSRLRPDQRLMXEGCWDEANTEKLRLEE 449
GVAPTDSRLRPDQRLM G WDEAN +KL +EE
Sbjct: 668 GVAPTDSRLRPDQRLMENGEWDEANRKKLEIEE 700
>Z81061-1|CAB02934.3| 436|Caenorhabditis elegans Hypothetical
protein F14H8.1 protein.
Length = 436
Score = 41.9 bits (94), Expect = 2e-04
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +3
Query: 267 WQRVAAPPDSDKWYNFTVLAAQLNEPEPG----VAPTDSRLRPDQRLMXEGCWDEANTEK 434
W P D ++FT LNE PG VAPTDSR R D + + +G DEA K
Sbjct: 310 WVSNQIPKLFDDQFHFTNFTLSLNEMYPGMSDTVAPTDSRRRKDMKALEDGKNDEAEEFK 369
Query: 435 LRLEE 449
+ EE
Sbjct: 370 HKYEE 374
>U28738-8|AAA68313.1| 126|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 3 protein.
Length = 126
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +2
Query: 116 ATKSDGRCQGSQRRAEVRATRSLGQPRGGGPR 211
A S GR +G R R G PRGGGPR
Sbjct: 94 AGASRGRGRGGMRGGRGGRGRGRGGPRGGGPR 125
>Z66515-11|CAA91354.1| 858|Caenorhabditis elegans Hypothetical
protein C05C10.6a protein.
Length = 858
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +3
Query: 90 PYGYFSKDTQRKVTGVVKDPNGVPRYVLQGHWDSRVEVAPVT--STSADNSVCKTGKFVT 263
PY F++ Q + N ++L G WDS V + P+T ++S+ ++ G ++
Sbjct: 109 PYAIFNEHKQNVCCLHI---NEKATHMLSGSWDSNVIIWPITELNSSSFTTIVCPGHTLS 165
Query: 264 AWQRVAAPPDSDKWY 308
W +A+ PD Y
Sbjct: 166 VW-ALASFPDLPNTY 179
>Z48178-10|CAA88206.1| 858|Caenorhabditis elegans Hypothetical
protein C05C10.6a protein.
Length = 858
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +3
Query: 90 PYGYFSKDTQRKVTGVVKDPNGVPRYVLQGHWDSRVEVAPVT--STSADNSVCKTGKFVT 263
PY F++ Q + N ++L G WDS V + P+T ++S+ ++ G ++
Sbjct: 109 PYAIFNEHKQNVCCLHI---NEKATHMLSGSWDSNVIIWPITELNSSSFTTIVCPGHTLS 165
Query: 264 AWQRVAAPPDSDKWY 308
W +A+ PD Y
Sbjct: 166 VW-ALASFPDLPNTY 179
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 28.7 bits (61), Expect = 2.1
Identities = 27/93 (29%), Positives = 41/93 (44%)
Frame = -1
Query: 403 SSMRRWSGRSRESVGATPGSGSLSCAASTVKLYHLSESGGAATRCHAVTNLPVLQTELSA 224
SS SG +V T S +STV + + GAA+ ++T+ Q ++
Sbjct: 764 SSTTMTSGVYSSTVTVTTQGSSSQAPSSTVTVPTTGTTSGAASTTGSITS--TQQATSTS 821
Query: 223 DVLVTGATSTRLSQ*PCSTYLGTPLGSLTTPVT 125
V+ TG+TS S S+ +P S TT T
Sbjct: 822 SVITTGSTSAPQSSTAVSSTTTSP--STTTGST 852
>Z66515-12|CAC42333.1| 860|Caenorhabditis elegans Hypothetical
protein C05C10.6b protein.
Length = 860
Score = 27.5 bits (58), Expect = 4.8
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +3
Query: 90 PYGYFSKDTQRKVTGVVKDPNGVPRYVLQGHWDSRVEVAPVTSTSADNSVCKT----GKF 257
PY F++ Q + N ++L G WDS V + P+T ++ + +T G
Sbjct: 109 PYAIFNEHKQNVCCLHI---NEKATHMLSGSWDSNVIIWPITELNSSSFTFQTIVCPGHT 165
Query: 258 VTAWQRVAAPPDSDKWY 308
++ W +A+ PD Y
Sbjct: 166 LSVW-ALASFPDLPNTY 181
>Z48178-11|CAC42247.1| 860|Caenorhabditis elegans Hypothetical
protein C05C10.6b protein.
Length = 860
Score = 27.5 bits (58), Expect = 4.8
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +3
Query: 90 PYGYFSKDTQRKVTGVVKDPNGVPRYVLQGHWDSRVEVAPVTSTSADNSVCKT----GKF 257
PY F++ Q + N ++L G WDS V + P+T ++ + +T G
Sbjct: 109 PYAIFNEHKQNVCCLHI---NEKATHMLSGSWDSNVIIWPITELNSSSFTFQTIVCPGHT 165
Query: 258 VTAWQRVAAPPDSDKWY 308
++ W +A+ PD Y
Sbjct: 166 LSVW-ALASFPDLPNTY 181
>U00042-1|AAA50674.1| 456|Caenorhabditis elegans Hypothetical
protein T04A6.3 protein.
Length = 456
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 276 VAAPPDSDKWYNFTVLAAQLNEPEPGVAPTDSRLRPDQRLMXEGCW---DEANTEK 434
V P +S KW+N +V + +L + T+ R+ P + CW +E EK
Sbjct: 370 VCFPDNSWKWFNKSVNSYRLTNDSDHIIRTEGRVGPCGVNNTDTCWYIPEELKNEK 425
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 26.6 bits (56), Expect = 8.4
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = -1
Query: 421 ASSQQPSSMRRWSGRSRESVGATPGSGSLSCAA-----STVKLYHLSESGGAATRCHAVT 257
ASS PSS S S +VG+T S + +A STV + S SG + A +
Sbjct: 1511 ASSTAPSSTGTMSSTSSGTVGSTISESSTTASASSQTGSTVTMGSSSTSG--VSTSSASS 1568
Query: 256 NLPVLQTELSADVLVTGATST 194
P + T + T A+ST
Sbjct: 1569 TQPQMSTSQGSSAGSTVASST 1589
Score = 26.6 bits (56), Expect = 8.4
Identities = 26/76 (34%), Positives = 34/76 (44%)
Frame = -1
Query: 421 ASSQQPSSMRRWSGRSRESVGATPGSGSLSCAASTVKLYHLSESGGAATRCHAVTNLPVL 242
ASS PSS S S +VG+T S AAST S +G T + T+ +
Sbjct: 1760 ASSTAPSSTGTMSSTSSGTVGSTMSQS--STAASTT-----SHTGSTVTLGSSSTSSNQM 1812
Query: 241 QTELSADVLVTGATST 194
T + V T A+ST
Sbjct: 1813 STSQGSSVGSTVASST 1828
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,668,768
Number of Sequences: 27780
Number of extensions: 149217
Number of successful extensions: 431
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -