Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0110
(484 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 271 6e-72
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 119 3e-26
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 101 6e-21
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 100 1e-20
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 91 9e-18
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 67 2e-10
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 65 7e-10
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 56 4e-07
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 56 4e-07
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 55 1e-06
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 53 4e-06
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 51 2e-05
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 47 2e-04
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 46 6e-04
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 45 8e-04
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 45 0.001
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 44 0.001
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 44 0.002
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 41 0.017
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 35 0.84
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 35 1.1
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 34 1.9
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 34 1.9
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 2.6
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 33 4.5
UniRef50_Q5EK48 Cluster: GNAT family histone acetyltransferase G... 33 4.5
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 33 4.5
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 271 bits (664), Expect = 6e-72
Identities = 132/161 (81%), Positives = 133/161 (82%)
Frame = +1
Query: 1 PAAAPAGAVTKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTV 180
PAAAPAGA+TKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIG LTV
Sbjct: 12 PAAAPAGALTKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTV 71
Query: 181 VVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILL 360
VVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILL
Sbjct: 72 VVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILL 131
Query: 361 AGRHAGKRXXXXXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
AGRHAGKR PFAFNSCPLRRIP RYV
Sbjct: 132 AGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYV 172
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 119 bits (287), Expect = 3e-26
Identities = 65/154 (42%), Positives = 83/154 (53%)
Frame = +1
Query: 22 AVTKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGG 201
A + KK K P N L G++R+SK++M+ ++A Y+ VK+IGG
Sbjct: 11 AKSAKKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGG 70
Query: 202 EKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGK 381
KNGG RTV LK+ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH GK
Sbjct: 71 PKNGGERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGK 130
Query: 382 RXXXXXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
R PFA NSCPLRR+ RYV
Sbjct: 131 RVVLLKVLASGLLLVTGPFALNSCPLRRVSQRYV 164
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 101 bits (243), Expect = 6e-21
Identities = 60/163 (36%), Positives = 80/163 (49%), Gaps = 2/163 (1%)
Frame = +1
Query: 1 PAAAPAGAVTKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTV 180
P A A K P+N+ L GV FS+SKMFHK+ +K V
Sbjct: 8 PKKAAAPDAKKAVVPGVPKNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRV 67
Query: 181 VVKQIGGEKNGGTRTVPLKRRKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCI 354
VK++ GEKNGG R +PLK+ + YPT++ + + +S +P S+ +R + GTV I
Sbjct: 68 TVKRVKGEKNGGKRVLPLKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLI 127
Query: 355 LLAGRHAGKRXXXXXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
LLAG H GKR P+ N CPLRRI YV
Sbjct: 128 LLAGPHRGKRVVFLKQLKTGLLPVTGPYGVNGCPLRRINQIYV 170
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 100 bits (240), Expect = 1e-20
Identities = 59/160 (36%), Positives = 81/160 (50%), Gaps = 9/160 (5%)
Frame = +1
Query: 31 KKKSTKKP---RNYDLGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVK 189
KK KP RN L G+ R+S+S M+ +KA KY L V K
Sbjct: 35 KKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTK 94
Query: 190 QIGGEKNGGTRTVPLKRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLA 363
+GG+KNGGTR V L++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L
Sbjct: 95 PVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILT 154
Query: 364 GRHAGKRXXXXXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
GRH GKR P N PLRR ++V
Sbjct: 155 GRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFV 194
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 91.5 bits (217), Expect = 9e-18
Identities = 57/150 (38%), Positives = 74/150 (49%), Gaps = 1/150 (0%)
Frame = +1
Query: 37 KSTKKP-RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNG 213
KS P RN +L G+ R+S+S ++ K+A YK T K IGG+KNG
Sbjct: 4 KSKDHPSRNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNG 62
Query: 214 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXX 393
G R VP++R +YPT E +R R + ++R ++ GTV ILLAG H GKR
Sbjct: 63 GKRVVPVQRESRYYPT-EDVRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVF 120
Query: 394 XXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
PF N PLRRIP YV
Sbjct: 121 LKQLNSGLLLVTGPFKINGVPLRRIPQSYV 150
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 67.3 bits (157), Expect = 2e-10
Identities = 37/104 (35%), Positives = 51/104 (49%)
Frame = +1
Query: 172 LTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVC 351
+ ++ K IGG KNGG R VP K+ +YP +K + R ++RP++K GT+
Sbjct: 20 IKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDK-KTPVPSRKNVHKPTKLRPSIKSGTIV 78
Query: 352 ILLAGRHAGKRXXXXXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
ILLAG G R P+A N PL R+ RYV
Sbjct: 79 ILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYV 122
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 65.3 bits (152), Expect = 7e-10
Identities = 36/102 (35%), Positives = 52/102 (50%)
Frame = +1
Query: 178 VVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCIL 357
V+ K+IGG+KNGGTR V ++ FYP + + +K+ +IR +L+ GT+ IL
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILIL 103
Query: 358 LAGRHAGKRXXXXXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
LAG + GKR P N PLRR+ + V
Sbjct: 104 LAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVHQKLV 145
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 56.0 bits (129), Expect = 4e-07
Identities = 35/88 (39%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +1
Query: 229 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXX 399
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKR
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 400 XXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
PF +N PLRR+ YV
Sbjct: 114 ALKSGLLLVTGPFKYNGVPLRRVNQCYV 141
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 56.0 bits (129), Expect = 4e-07
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Frame = +1
Query: 175 TVVVKQIGGEKN--GGTRTVPLKRRKS--FYPTQEKIRASSGGRPFSKHVRRIRPNLKIG 342
T+ K +G K G R +P +K+ +YP ++ + + + H ++RP+L+ G
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPG 61
Query: 343 TVCILLAGRHAGKRXXXXXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
T+ ILLAGR GKR PF N PLRR+ RYV
Sbjct: 62 TILILLAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVPLRRVNARYV 108
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 54.8 bits (126), Expect = 1e-06
Identities = 41/151 (27%), Positives = 66/151 (43%)
Frame = +1
Query: 31 KKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKN 210
K+++ K RN DL GV ++S+S+M+HK+ + + V
Sbjct: 4 KQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV--------- 54
Query: 211 GGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXX 390
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKR
Sbjct: 55 ----DAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVV 108
Query: 391 XXXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
PF N PLRR+ YV
Sbjct: 109 FLKQLASGLLLVTGPFKINGVPLRRVNQAYV 139
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 52.8 bits (121), Expect = 4e-06
Identities = 27/62 (43%), Positives = 32/62 (51%)
Frame = +1
Query: 298 FSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXXXPFAFNSCPLRRIPXR 477
F+ H RRIR ++ G V ILLAGRH KR PF +N PLRR+ R
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 478 YV 483
YV
Sbjct: 146 YV 147
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 50.8 bits (116), Expect = 2e-05
Identities = 32/86 (37%), Positives = 42/86 (48%)
Frame = +1
Query: 226 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXX 405
V L RRK+ K + GR ++ V ++R +LK G V ILL G + GKR
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVL 68
Query: 406 XXXXXXXXXPFAFNSCPLRRIPXRYV 483
PF+FN PLRR+ RYV
Sbjct: 69 KSGLLLVTGPFSFNGVPLRRVNSRYV 94
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 47.2 bits (107), Expect = 2e-04
Identities = 31/90 (34%), Positives = 41/90 (45%)
Frame = +1
Query: 214 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXX 393
G R + K K +IR+++ + K +R ++ GTV I+LAGR AGKR
Sbjct: 54 GKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPGTVLIILAGRFAGKRVVA 111
Query: 394 XXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
PF N PLRRI RYV
Sbjct: 112 LKQLDSGLILITGPFKVNGVPLRRIDQRYV 141
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 45.6 bits (103), Expect = 6e-04
Identities = 28/83 (33%), Positives = 42/83 (50%)
Frame = +1
Query: 235 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXX 414
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKR
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 415 XXXXXXPFAFNSCPLRRIPXRYV 483
PF N PLRR+ RYV
Sbjct: 62 TLLISGPFKVNGVPLRRVNARYV 84
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 45.2 bits (102), Expect = 8e-04
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Frame = +1
Query: 181 VVKQIGGEKNGGTRTVPLKRRKSFYPTQEK--IRASSGGRPFS---KHV--RRIRPNLKI 339
VV G +KN V ++K P + K I GR + K V R++R ++++
Sbjct: 17 VVPATGDKKNALKHYVIKGQKKILTPVRAKKTISKKHYGRKLASKKKFVVQRKMRSSIQV 76
Query: 340 GTVCILLAGRHAGKRXXXXXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
G V I+L G+H GKR P+ N PL+R+ RY+
Sbjct: 77 GKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYL 124
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 44.8 bits (101), Expect = 0.001
Identities = 27/66 (40%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 292 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRXXXXXXXXXXXXXXXXPFAFNSCPLRR 465
RP K +R P + GTV ILLAGR GKR PF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 466 IPXRYV 483
+ RYV
Sbjct: 84 VNARYV 89
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 44.4 bits (100), Expect = 0.001
Identities = 24/70 (34%), Positives = 33/70 (47%)
Frame = +1
Query: 274 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXXXPFAFNSC 453
R S R S ++R +L+ G VCILLAG + GKR P+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 454 PLRRIPXRYV 483
P+RR+ Y+
Sbjct: 80 PVRRVNPAYI 89
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 44.0 bits (99), Expect = 0.002
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 250 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXX 426
FYP + K R S +P + ++R ++ GTV ILLAGR GKR
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 427 XXPFAFNSCPLRRIPXRYV 483
PF N P+RR+ YV
Sbjct: 110 TGPFKINGVPIRRVNQPYV 128
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 40.7 bits (91), Expect = 0.017
Identities = 30/114 (26%), Positives = 52/114 (45%)
Frame = +1
Query: 31 KKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKN 210
+K + RN L G R+S ++ +K Y + + V+K + G+KN
Sbjct: 41 RKGKSHCTRNPILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKN 98
Query: 211 GGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRH 372
GGT V L++ K + + + + S P KH + + N TV I++ G+H
Sbjct: 99 GGTGVVKLQKMKMYLGSCKAMAKS----PAFKHEKAV-CNSTPETVLIIITGQH 147
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 35.1 bits (77), Expect = 0.84
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 319 IRPNLKIGTVCILLAGRHAGKR-XXXXXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
+R L GTV I+LAGRH GKR P N PLRRI +V
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFV 122
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 34.7 bits (76), Expect = 1.1
Identities = 24/71 (33%), Positives = 31/71 (43%)
Frame = +1
Query: 271 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXXXPFAFNS 450
+R RP + +R+I P G V ILL+GR GKR PF N
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKING 97
Query: 451 CPLRRIPXRYV 483
PL+R+ YV
Sbjct: 98 VPLKRVNSAYV 108
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 33.9 bits (74), Expect = 1.9
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 322 RPNLKIGTVCILLAGRHAGKR 384
RP+LK+GTV I++ G H GKR
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKR 73
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 33.9 bits (74), Expect = 1.9
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 205 KNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 336
K R LK SF P + + ASS GRP K +R+R LK
Sbjct: 128 KEDHNREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 2.6
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -3
Query: 404 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 270
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 32.7 bits (71), Expect = 4.5
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 322 RPNLKIGTVCILLAGRHAGKR 384
+P +K G VCI+L GRHAGK+
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKK 23
>UniRef50_Q5EK48 Cluster: GNAT family histone acetyltransferase
GCN5-B; n=1; Toxoplasma gondii|Rep: GNAT family histone
acetyltransferase GCN5-B - Toxoplasma gondii
Length = 1032
Score = 32.7 bits (71), Expect = 4.5
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -3
Query: 470 GIRRSGHELKAKGPVXKSRPXGRIPTSTTLLPACLPARRMQTVPI 336
G RRS H A+GP S GR+P S PA R + P+
Sbjct: 157 GSRRSSHAEPAEGPSLPSGADGRLPASGPWASEAPPAGRSASAPV 201
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 32.7 bits (71), Expect = 4.5
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 319 IRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXXX-PFAFNSCPLRRIPXRYV 483
+R + G + I+LAGR G+R P +N P+RRI RYV
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYV 84
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,043,130
Number of Sequences: 1657284
Number of extensions: 8748038
Number of successful extensions: 21653
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 21069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21626
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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