Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0110
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    45   3e-05
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    42   2e-04
12_01_0850 + 7985289-7985789,7986636-7986888,7987173-7987231           28   3.4  
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967...    27   7.9  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
 Frame = +1

Query: 205 KNGGTRTVPLK----RRKSFYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGR 369
           KNGGT     K        FYP  + K RA S  +    +  ++R  +  GTV ILLAGR
Sbjct: 31  KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGR 87

Query: 370 HAGKRXXXXXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
           + GKR                PF  N  P+RR+   YV
Sbjct: 88  YMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYV 125


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +1

Query: 256 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXX 429
           PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKR               
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130

Query: 430 XPFAFNSCPLRRIPXRYV 483
            PF  N  P+RR+   YV
Sbjct: 131 GPFKINGVPIRRVNQPYV 148


>12_01_0850 + 7985289-7985789,7986636-7986888,7987173-7987231
          Length = 270

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 1   PAAAPAGAVTKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFI 135
           P AA      +KK+ +    +DLG G    S S++F  K ++ FI
Sbjct: 221 PTAASLAYGFEKKNNETILVFDLGGGTFDVSGSELFSHKHEFYFI 265


>08_02_1540 +
           27694565-27694579,27696364-27696447,27696599-27696731,
           27696840-27696951,27697530-27697629,27697810-27697937,
           27698046-27698115,27698548-27698636,27698719-27698764,
           27698854-27698924,27699002-27699075,27699341-27699433,
           27699539-27699572,27699704-27699789,27702147-27702223,
           27702445-27702533,27702630-27702813,27703068-27703249,
           27703962-27704064,27704159-27704490,27704577-27705018,
           27705749-27705846,27706988-27707081,27707666-27707787,
           27708025-27708078,27708185-27708304,27708595-27708799,
           27708889-27709059,27709155-27709310,27709375-27709431,
           27709474-27709580,27709708-27709798,27709931-27710072,
           27710149-27710305,27710400-27710516,27710596-27710722,
           27710844-27711066,27711460-27711466,27711656-27711788
          Length = 1574

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 195 WR*EEWGNQNSTPQT*EV--LLPHSGENPCFIWWP 293
           W+  E   Q+++P   ++  L  H+G+  C +WWP
Sbjct: 86  WKIPELHGQSNSPPLEQLFTLDEHTGKIRCVLWWP 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,184,831
Number of Sequences: 37544
Number of extensions: 271536
Number of successful extensions: 580
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)