Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0110
         (484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               27   6.1  

>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +3

Query: 216 NQNSTPQ---T*EVLLPHSGENPCFIWWPSIQQACTQDPTQP 332
           NQ++ PQ   T  VL+PH G  PC   +P+         TQP
Sbjct: 94  NQSTLPQGNATQWVLIPHKGSMPCIGTFPNAINTWIIPGTQP 135


>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 433 PFAFNSCPLRRIPXRYV 483
           PF  N  PLRRIP  YV
Sbjct: 2   PFKINGVPLRRIPQSYV 18


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,582,566
Number of Sequences: 59808
Number of extensions: 285015
Number of successful extensions: 838
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)