Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0110
         (484 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070994-1|AAL48616.1|  262|Drosophila melanogaster RE08669p pro...   119   2e-27
AE014297-4764|AAF57167.1|  262|Drosophila melanogaster CG11522-P...   119   2e-27
AE014297-4763|AAF57166.1|  243|Drosophila melanogaster CG11522-P...    88   7e-18
AY752581-1|AAW32027.1|  167|Drosophila melanogaster CG11942 prot...    28   7.7  
AY752578-1|AAW32024.1|  167|Drosophila melanogaster CG11942 prot...    28   7.7  
AY119636-1|AAM50290.1|  620|Drosophila melanogaster RE43020p pro...    28   7.7  
AE014298-2941|AAF49023.1|  167|Drosophila melanogaster CG11942-P...    28   7.7  
AE014296-619|AAF47751.2|  594|Drosophila melanogaster CG12017-PA...    28   7.7  

>AY070994-1|AAL48616.1|  262|Drosophila melanogaster RE08669p
           protein.
          Length = 262

 Score =  119 bits (287), Expect = 2e-27
 Identities = 65/154 (42%), Positives = 83/154 (53%)
 Frame = +1

Query: 22  AVTKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGG 201
           A + KK  K P N  L  G++R+SK++M+ ++A Y+                  VK+IGG
Sbjct: 11  AKSAKKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGG 70

Query: 202 EKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGK 381
            KNGG RTV LK+ K+ YPT+  ++       FS+H R  R NL  GTV ILLAGRH GK
Sbjct: 71  PKNGGERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGK 130

Query: 382 RXXXXXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
           R                PFA NSCPLRR+  RYV
Sbjct: 131 RVVLLKVLASGLLLVTGPFALNSCPLRRVSQRYV 164


>AE014297-4764|AAF57167.1|  262|Drosophila melanogaster CG11522-PB,
           isoform B protein.
          Length = 262

 Score =  119 bits (287), Expect = 2e-27
 Identities = 65/154 (42%), Positives = 83/154 (53%)
 Frame = +1

Query: 22  AVTKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGG 201
           A + KK  K P N  L  G++R+SK++M+ ++A Y+                  VK+IGG
Sbjct: 11  AKSAKKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGG 70

Query: 202 EKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGK 381
            KNGG RTV LK+ K+ YPT+  ++       FS+H R  R NL  GTV ILLAGRH GK
Sbjct: 71  PKNGGERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGK 130

Query: 382 RXXXXXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
           R                PFA NSCPLRR+  RYV
Sbjct: 131 RVVLLKVLASGLLLVTGPFALNSCPLRRVSQRYV 164


>AE014297-4763|AAF57166.1|  243|Drosophila melanogaster CG11522-PA,
           isoform A protein.
          Length = 243

 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 56/154 (36%), Positives = 77/154 (50%)
 Frame = +1

Query: 22  AVTKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGG 201
           A + KK  K P N  L  G++R+SK++M+ ++A Y+               + VV++   
Sbjct: 11  AKSAKKGKKHPVNSYLKGGILRYSKAQMYKRRALYRL----------KDKKSPVVEKA-- 58

Query: 202 EKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGK 381
                   VP+K+ K+ YPT+  ++       FS+H R  R NL  GTV ILLAGRH GK
Sbjct: 59  -------KVPIKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGK 111

Query: 382 RXXXXXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
           R                PFA NSCPLRR+  RYV
Sbjct: 112 RVVLLKVLASGLLLVTGPFALNSCPLRRVSQRYV 145


>AY752581-1|AAW32027.1|  167|Drosophila melanogaster CG11942
           protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -3

Query: 455 GHELKAKGPVXKSRPXGRI---PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPP 285
           G ELK + P   S P   I     STTLL   L A+++Q   +  L   +   ++ G+ P
Sbjct: 76  GEELKPRRPYAIS-PWDAIFLMVNSTTLLEIILAAKQLQIKGLLELTYNVVANMIRGKTP 134

Query: 284 DEAR 273
           +E R
Sbjct: 135 EEIR 138


>AY752578-1|AAW32024.1|  167|Drosophila melanogaster CG11942
           protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -3

Query: 455 GHELKAKGPVXKSRPXGRI---PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPP 285
           G ELK + P   S P   I     STTLL   L A+++Q   +  L   +   ++ G+ P
Sbjct: 76  GEELKPRRPYAIS-PWDAIFLMVNSTTLLEIILAAKQLQIKGLLELTYNVVANMIRGKTP 134

Query: 284 DEAR 273
           +E R
Sbjct: 135 EEIR 138


>AY119636-1|AAM50290.1|  620|Drosophila melanogaster RE43020p
           protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 34  KKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFI 135
           K+  + P NY   NGV R  K K   KKA  KFI
Sbjct: 437 KRKHRNPLNYGRSNGVTRGKKKK--KKKAIAKFI 468


>AE014298-2941|AAF49023.1|  167|Drosophila melanogaster CG11942-PA
           protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -3

Query: 455 GHELKAKGPVXKSRPXGRI---PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPP 285
           G ELK + P   S P   I     STTLL   L A+++Q   +  L   +   ++ G+ P
Sbjct: 76  GEELKPRRPYAIS-PWDAIFLMVNSTTLLEIILAAKQLQIKGLLELTYNVVANMIRGKTP 134

Query: 284 DEAR 273
           +E R
Sbjct: 135 EEIR 138


>AE014296-619|AAF47751.2|  594|Drosophila melanogaster CG12017-PA
           protein.
          Length = 594

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 34  KKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFI 135
           K+  + P NY   NGV R  K K   KKA  KFI
Sbjct: 437 KRKHRNPLNYGRSNGVTRGKKKK--KKKAIAKFI 468


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,288,394
Number of Sequences: 53049
Number of extensions: 430875
Number of successful extensions: 1048
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1684597257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)