Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0110
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    55   3e-08
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    54   4e-08
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    50   6e-07
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   0.94 
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea...    28   3.8  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 41/151 (27%), Positives = 66/151 (43%)
 Frame = +1

Query: 31  KKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKN 210
           K+++ K  RN DL  GV ++S+S+M+HK+  +                + V         
Sbjct: 4   KQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV--------- 54

Query: 211 GGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXX 390
                 P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKR  
Sbjct: 55  ----DAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVV 108

Query: 391 XXXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
                         PF  N  PLRR+   YV
Sbjct: 109 FLKQLASGLLLVTGPFKINGVPLRRVNQAYV 139


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 41/151 (27%), Positives = 66/151 (43%)
 Frame = +1

Query: 31  KKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKN 210
           K+++ K  RN DL  GV ++S+S+M+HK+  +                + V         
Sbjct: 4   KQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV--------- 54

Query: 211 GGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXX 390
                 P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKR  
Sbjct: 55  ----DAPVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVV 108

Query: 391 XXXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
                         PF  N  PLRR+   YV
Sbjct: 109 FLKQLASGLLLVTGPFKINGVPLRRVNQAYV 139


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 50.4 bits (115), Expect = 6e-07
 Identities = 40/150 (26%), Positives = 63/150 (42%)
 Frame = +1

Query: 34  KKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNG 213
           K++ K  RN DL  GV ++S+S+M+HK+  +                  V          
Sbjct: 5   KRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKV---------- 54

Query: 214 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXX 393
                P+++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKR   
Sbjct: 55  ---DAPVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVF 109

Query: 394 XXXXXXXXXXXXXPFAFNSCPLRRIPXRYV 483
                        PF  N  PLRR+   YV
Sbjct: 110 LKQLSSGLLLVTGPFKINGVPLRRVNQAYV 139


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 229 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 318
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to Rbap46 polypeptide (GI:9454362) [Gallus
           gallus]
          Length = 351

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 195 WR*EEWGNQNSTPQT*EV--LLPHSGENPCFIWWPS 296
           W+  E   Q ++PQ   V  L  H G+  C +WWPS
Sbjct: 96  WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,132,100
Number of Sequences: 28952
Number of extensions: 200625
Number of successful extensions: 459
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)