Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0109
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.3  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   10.0 
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   10.0 
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   10.0 
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   10.0 

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 356 NPVLSHG-GLLLDRYGEPPRLREAILRC 436
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 224 NESEDSKENSPHLNFSYNHRFFDD--IQKNMC 135
           N S+ + +N PHL+    ++ F+D  I K++C
Sbjct: 369 NTSKQASQNLPHLDDELAYQRFEDQVIDKSVC 400


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 576 EHALKLESDVTNSIRXVIKTCESSFNDYHLV 668
           E   +L   V N I  ++KTC +S ND  ++
Sbjct: 749 ESQKELMYGVRNDIDALVKTCTTSLNDADII 779


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 31  HTRIGLIYLNFLRIISRLLRQCV*RLDLYN 120
           H RI  I L F+R+ S++ R CV  +++Y+
Sbjct: 327 HARIKNIEL-FIRLYSQMYRHCVPIIEIYD 355


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 261 VSPVTIRDEWLTMEQTCYNMMRKQIQEEV 347
           +S  +++  ++  EQ  Y   +KQ QEE+
Sbjct: 39  LSDASVKSSYVDQEQQAYENWKKQEQEEI 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,071
Number of Sequences: 5004
Number of extensions: 40485
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)