Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0109
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    68   5e-12
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    55   4e-08
AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical...    29   2.3  
AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 44/118 (37%), Positives = 57/118 (48%)
 Frame = +3

Query: 321 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMXGKL 500
           + KQI  E+ AS  YL+M  YF  D V  P  AK F + + EEREHAT+    L+    L
Sbjct: 16  VNKQINIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATE----LMRVQNL 71

Query: 501 TGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIRXVIKTCESSFNDYHLVDY 674
            G    L   + P N  W +   A E AL LE     S+  +  T   + ND HL D+
Sbjct: 72  RGGRVVLQDIQKPENDEWGTALKAFEAALALEKFNNESLLKLHSTA-GNHNDAHLTDF 128


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 40/118 (33%), Positives = 56/118 (47%)
 Frame = +3

Query: 321 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMXGKL 500
           + KQI  E+ AS  YL+M A+F  D +     AK F + + EER HAT+L+    + G  
Sbjct: 16  VNKQINVELYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRG-- 73

Query: 501 TGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIRXVIKTCESSFNDYHLVDY 674
            G V  +   + P    W +   A E AL LE     S+  +    E   ND HL +Y
Sbjct: 74  -GRVA-MQNIQKPEKDEWGTVLEAFEAALALERANNASLLKLHGIAEQR-NDAHLTNY 128


>AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical
           protein F19B10.10 protein.
          Length = 639

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -1

Query: 179 SYNHRFFDDIQKNMCS*KQ*LYKSSLY 99
           SYNHRFF  I K++ S K+ LYK+ ++
Sbjct: 99  SYNHRFF--IHKDISSDKKFLYKNDIF 123


>AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical
           protein Y77E11A.9 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +3

Query: 393 DTVNRPGFAKLFFDAATEEREHATKLIDYLLMXGKLT--GSVTDLITYRAPANTSWESGA 566
           +T NR  +A++  D    +   +T    Y +     T   SV     Y    N+S  + A
Sbjct: 196 ETANRNTYARI--DGIRTKACQSTPRTPYCMSPKGFTFLSSVPTFEHYNWVTNSS--AMA 251

Query: 567 SALEHALKLESDVTNSIRXVIKTCESSFN 653
           +A ++ L L  +  N+++  +K+CE +FN
Sbjct: 252 TANDNCLVLVFNGNNAVKVDVKSCEGNFN 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,681,146
Number of Sequences: 27780
Number of extensions: 242902
Number of successful extensions: 538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)