Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0108
         (572 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.8  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.3  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   7.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.9  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 164 HGTRTLRQKRKLFP-DLSAASSGHFGLPRRTXVFKDEGTIIETVPLPG 24
           HG R    K+K+ P D SAA++        +  F+ E  +I+T P  G
Sbjct: 23  HGVRAPGAKKKVGPIDQSAAAASWHDFD-NSDFFQSEHAVIQTHPSIG 69


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 164 HGTRTLRQKRKLFP-DLSAASSGHFGLPRRTXVFKDEGTIIETVPLPG 24
           HG R    K+K+ P D SAA++        +  F+ E  +I+T P  G
Sbjct: 23  HGVRAPGAKKKVGPIDQSAAAASWHDFD-NSDFFQSEHAVIQTHPSIG 69


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 253 NFQGPQRVSGHRRKC 209
           NF GP R++   R+C
Sbjct: 601 NFHGPHRLAARSRRC 615



 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 125 PDLSAASSGHFGLPRRTXVFKDEG 54
           P +S++     G      VFKDEG
Sbjct: 2   PHVSSSGGDDLGSTDEVKVFKDEG 25


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 253 NFQGPQRVSGHRRKC 209
           NF GP R++   R+C
Sbjct: 493 NFHGPHRLAARSRRC 507


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 171 RIPWNSNAQAEKKTLPGPLG 112
           +IPW+ NA+A  K   G  G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 450 HRPHPLPVQTRHAPVLRANPYS 385
           +R HPL + + H  +L  NP S
Sbjct: 332 NRCHPLSLSSDHQAMLHHNPMS 353


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -1

Query: 299 YGYEPARHLHVHPSPEFSRSAESIR 225
           + Y P  H   +P+P +   A+  R
Sbjct: 76  WNYSPDNHFEQYPNPTYYNLADPAR 100


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
 Frame = -1

Query: 266 HPSPEFSRSAESIRTPPQMRCXSRSE-----PYLPSIGFH 162
           HP    S+ + +   PPQ+    R E     P +P + F+
Sbjct: 217 HPDSPNSKKSATPSPPPQLEVNERKENLTCQPAVPYVPFY 256


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 241 DLENSGEGCTWRCRAGSYPYPQQVS 315
           D  N G+G + +C      YP  +S
Sbjct: 613 DSINEGDGVSVQCTVSKGDYPLNIS 637


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 428 SKPDTPRSSEP 396
           SKP TP S EP
Sbjct: 227 SKPGTPPSGEP 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,386
Number of Sequences: 336
Number of extensions: 2984
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)