Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0108
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.64 
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   1.5  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.5  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   6.0  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   6.0  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   6.0  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    25   7.9  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 434 SGCGRCRVWSMFVRYVRFXE 493
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 304 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGAXRVPNHISL 176
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = -1

Query: 212 MRCXSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTXVFK 63
           MR     E Y+  + G H   T  Q   LF D     + H  L RRT   K
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVK 51


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 471 TNIDQTRHRPHPLPVQTRHAPV 406
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 359 FPYLHYSID*RLFTLETCCGYGYEPARHL 273
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = -1

Query: 236 ESIRTPPQMRCXSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTXVFKDE 57
           ESI   P+       E    ++ F GTR L+  +  F  L    +G   +  RT     +
Sbjct: 317 ESIELRPEEAVIDVDELDKNAVLFGGTRVLQVTQSPFCKLKTPDNGVPAIVLRTGFETSQ 376

Query: 56  GTIIETV 36
           G+++ T+
Sbjct: 377 GSLVRTM 383


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 160 PWNPIEGRYGSEREXHRI 213
           P+ P+EG Y + ++ HRI
Sbjct: 3   PYEPVEGLYVNAKQYHRI 20


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,102
Number of Sequences: 5004
Number of extensions: 47934
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)