Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0108
         (572 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC093754-1|AAH93754.1|  587|Homo sapiens hypothetical protein LO...    31   3.8  
BC093752-1|AAH93752.1|  587|Homo sapiens hypothetical protein LO...    31   3.8  
AF131737-1|AAD20026.1|  587|Homo sapiens Unknown protein.              31   3.8  
AC079353-1|AAY24034.1|  423|Homo sapiens unknown protein.              31   3.8  
AL137689-1|CAB70875.1|  420|Homo sapiens hypothetical protein pr...    30   5.0  
AF542964-1|AAN33178.1|  306|Homo sapiens PlSC domain containing ...    29   8.8  

>BC093754-1|AAH93754.1|  587|Homo sapiens hypothetical protein
           LOC51057 protein.
          Length = 587

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 148 SVRVPWNPIEGRYGSEREXHRICGGVRILSADLENSGEGCTWRC 279
           SVR  W+P++ R+G+ ++ +++      +S D E   + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162


>BC093752-1|AAH93752.1|  587|Homo sapiens hypothetical protein
           LOC51057 protein.
          Length = 587

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 148 SVRVPWNPIEGRYGSEREXHRICGGVRILSADLENSGEGCTWRC 279
           SVR  W+P++ R+G+ ++ +++      +S D E   + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162


>AF131737-1|AAD20026.1|  587|Homo sapiens Unknown protein.
          Length = 587

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 148 SVRVPWNPIEGRYGSEREXHRICGGVRILSADLENSGEGCTWRC 279
           SVR  W+P++ R+G+ ++ +++      +S D E   + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162


>AC079353-1|AAY24034.1|  423|Homo sapiens unknown protein.
          Length = 423

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 148 SVRVPWNPIEGRYGSEREXHRICGGVRILSADLENSGEGCTWRC 279
           SVR  W+P++ R+G+ ++ +++      +S D E   + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162


>AL137689-1|CAB70875.1|  420|Homo sapiens hypothetical protein
           protein.
          Length = 420

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 166 SMELERSGR-KENSSRTSRRRLQATLGYPVEXSFLKTRERLLKRFRCRVXGI 14
           S  + RSGR + +SSRT +RRL++         F K++ R  K  R +  G+
Sbjct: 121 SQRMRRSGRTRRSSSRTMKRRLESFKSTKHNICFTKSKPRPRKTGRRKKDGV 172


>AF542964-1|AAN33178.1|  306|Homo sapiens PlSC domain containing
           hypothetical protein protein.
          Length = 306

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
 Frame = -3

Query: 414 APVLRANPYSEVTDPICRLP--LPTLFYRLEALH---LGDLLRI--WVRTGATSPRTSLT 256
           APVL A P+S   DPI  LP  LP +  R E L    +G LLR    +      P +   
Sbjct: 121 APVLVAAPHSTFFDPIVLLPCDLPKVVSRAENLSVPVIGALLRFNQAILVSRHDPASRRR 180

Query: 255 *IFKVRREYPDTAANAVLFAF-RTISPFYRIPWNSNAQAEKKTLPGPLGGVFRP-LWVTP 82
            + +VRR           ++F R   P  R+  +SN +   +     L     P +W  P
Sbjct: 181 VVEEVRRRATSGGKWPQCYSFLRAPVPTRRLCLSSNQEPSSQGCLCSLSSSATPTVWTPP 240

Query: 81  S 79
           +
Sbjct: 241 A 241


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,641,064
Number of Sequences: 237096
Number of extensions: 1913607
Number of successful extensions: 4947
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4947
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)