Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0108
(572 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 1.8
AF039047-11|AAB94230.1| 354|Caenorhabditis elegans Prion-like-(... 29 3.1
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 28 5.4
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 28 5.4
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 28 5.4
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 28 5.4
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 28 5.4
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 7.2
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 27 9.5
AL132952-10|CAB63384.1| 591|Caenorhabditis elegans Hypothetical... 27 9.5
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -3
Query: 480 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 367
T +++ID T H PHP+ VQ T+ V+ P V+ P+
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>AF039047-11|AAB94230.1| 354|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 51
protein.
Length = 354
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -3
Query: 465 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGD 310
+D + P P P Q H P +R NP P+ + P+ L L A H+GD
Sbjct: 53 VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGD 104
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 194 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTXVFKDEGTIIE 42
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1216 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1264
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 194 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTXVFKDEGTIIE 42
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 194 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTXVFKDEGTIIE 42
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 194 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTXVFKDEGTIIE 42
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1216 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1264
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 194 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTXVFKDEGTIIE 42
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 194 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTXVFKDEGTIIE 42
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 485 NEHNARTSTRPGTGRIRFPSKPDT 414
NE+ TS++PG R+ P+K DT
Sbjct: 561 NENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 485 NEHNARTSTRPGTGRIRFPSKPDT 414
NE+ TS++PG R+ P+K DT
Sbjct: 530 NENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 485 NEHNARTSTRPGTGRIRFPSKPDT 414
NE+ TS++PG R+ P+K DT
Sbjct: 561 NENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 485 NEHNARTSTRPGTGRIRFPSKPDT 414
NE+ TS++PG R+ P+K DT
Sbjct: 530 NENRGETSSQPGRDRLAPPNKTDT 553
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -3
Query: 246 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 118
K+ +E D A N + FR I+PF P+ +N Q + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 455 PGTGRIRFPSKPDTPRSSEPILIPKLRI 372
P ++ SKP TP + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351
>AL132952-10|CAB63384.1| 591|Caenorhabditis elegans Hypothetical
protein Y51H4A.13 protein.
Length = 591
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = -2
Query: 157 LERSGRKENSSRTSRRRLQATLG----YPVEXSFLKTRERLLKRF 35
+E SGR+E +R LQA++ + + F KT+ + K+F
Sbjct: 525 VEMSGRREQETRNKESILQASISIMKYFVLYCGFTKTKSHIRKKF 569
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,191,247
Number of Sequences: 27780
Number of extensions: 280154
Number of successful extensions: 932
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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