Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0108
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 194 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 111
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 433 KRMRPVPGLVDVRALCSFXRVXILI*CGLKNCI 531
           K +RPV    DV  +C   ++  LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 433 KRMRPVPGLVDVRALCSFXRVXILI*CGLKNCI 531
           K +RPV    DV  +C   ++  LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 171 RIPWNSNAQAEKKTLPGPLG 112
           +IPW+ N +A  K   G  G
Sbjct: 334 QIPWDKNVEALAKWANGQTG 353


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 80  DGVTQSGLKTPPRGPG 127
           DG     L +PPR PG
Sbjct: 128 DGPPSVSLSSPPREPG 143


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 444 PHPLPVQTRHAPVLRANPYSEV 379
           P PLP     A + + +PYS +
Sbjct: 652 PFPLPPNLASANISQLDPYSSL 673


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 125 PDLSAASSGHFGLP 84
           PDL+  S G  GLP
Sbjct: 336 PDLAGTSQGSAGLP 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,119
Number of Sequences: 438
Number of extensions: 3708
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)