Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0108
         (572 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   1.7  
At1g76965.1 68414.m08961 glycine-rich protein                          29   1.7  
At5g42370.1 68418.m05159 expressed protein                             29   2.9  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    29   2.9  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    29   2.9  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    28   5.1  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    28   5.1  
At5g22390.1 68418.m02612 expressed protein                             27   6.7  
At1g60230.1 68414.m06783 radical SAM domain-containing protein  ...    27   6.7  
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta...    27   8.9  
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta...    27   8.9  

>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 241 PQRVSGHRRKCGAXRVPNHISLL*DSMELERSGRKENSSRTSRRR 107
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 455 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 360
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 180 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNXR 70
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 211 ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 312
           I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 236 ESIRTPPQMRCXSRSEPYLPSIGFHGTRTLRQK 138
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 464 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 345
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 464 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 345
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 115 ERSGKSFLFCLSVRVPWNPIEG 180
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


>At1g60230.1 68414.m06783 radical SAM domain-containing protein
           contains Pfam profile PF04055: radical SAM domain
           protein
          Length = 458

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 128 FPDLSAASSGHFGLPRRTXVFKDEGTIIETVPLPGXRNRNRI 3
           F D+ +AS G     R+     D+G +IETV +P  R R  +
Sbjct: 161 FKDIRSASDG----TRKILFTLDDGLVIETVVIPCDRGRTTV 198


>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 495 NSXKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP 370
           N  K T  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 495 NSXKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP 370
           N  K T  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,651,075
Number of Sequences: 28952
Number of extensions: 271660
Number of successful extensions: 732
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)