Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0106
         (724 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.47 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.47 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.47 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   3.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   5.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   7.6  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 341 NVTGAXGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASGPN 186
           N+ G   + M       SPT  TA  S T +  ++++T   F S G    PN
Sbjct: 235 NIHGMAPSVMYPHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 286


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 341 NVTGAXGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASGPN 186
           N+ G   + M       SPT  TA  S T +  ++++T   F S G    PN
Sbjct: 183 NIHGMAPSVMYPHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 234


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 341 NVTGAXGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASGPN 186
           N+ G   + M       SPT  TA  S T +  ++++T   F S G    PN
Sbjct: 366 NIHGMAPSVMYPHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 417


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 537 MPKAKLHRPXRMPRNEQTAWRPILG*SY 620
           MP   +H P   P   Q A + I+G  Y
Sbjct: 452 MPSQYIHEPWTAPEQVQRAAKCIIGKDY 479


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 124 WDPXAKAEYPRSNKLVI 174
           W P  KAE P SN + I
Sbjct: 95  WVPGGKAEVPPSNPIYI 111


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 574 QEMNKPPGDP 603
           Q M++PPGDP
Sbjct: 429 QMMHRPPGDP 438


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = +2

Query: 101 HHHISQRHGIQXQKQNTHAATSSSFVKH 184
           HHH       Q    N H A + S   H
Sbjct: 323 HHHAGHHIHAQHHVVNHHVAANGSLKHH 350


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,088
Number of Sequences: 336
Number of extensions: 2490
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)