Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0106
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187...    31   0.93 
02_01_0616 + 4616936-4617307,4618723-4618809,4619322-4619384,461...    28   6.5  
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744...    28   6.5  
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672...    28   8.6  

>04_01_0168 -
           1874297-1874645,1874968-1875137,1875688-1875807,
           1876750-1876812
          Length = 233

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 356 P*TRVNVTGAXGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCIT 219
           P T  + T A   S S + C DSPT +T++G  T +     S   T
Sbjct: 4   PTTSYSTTSAMERSNSTKRCSDSPTVSTSSGRVTTTAWSSTSGAAT 49


>02_01_0616 +
           4616936-4617307,4618723-4618809,4619322-4619384,
           4619478-4619537,4619570-4619602,4621584-4621751
          Length = 260

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 348 CSXFGASTLNWTPSPWCSA 404
           CS  GA    WTP  WCS+
Sbjct: 16  CSLRGADLAGWTPPWWCSS 34


>01_06_0866 - 32572002-32572541,32572806-32572984,32574330-32574430,
            32574554-32574887,32574915-32575037,32575193-32575394,
            32575915-32576097,32576332-32576436,32576553-32576760,
            32577025-32577170,32577321-32577443,32577490-32577698,
            32577931-32578152,32578189-32578198,32578710-32578763,
            32580841-32581052,32581620-32581772,32582071-32582158,
            32582192-32582290,32582660-32582907,32584806-32585049
          Length = 1260

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 344  VNVTGAXGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASG 192
            V + G  G  + R     SP F    G+   +C D A+  + +  SG+A G
Sbjct: 1140 VRLAGYEGIDLGRPAATVSPEFRVTLGTANGACVDRAAVTVLY--SGVALG 1188


>02_02_0096 -
           6727844-6727957,6728149-6728247,6728332-6728410,
           6728534-6728634,6728740-6728808,6729180-6729220,
           6729992-6730836,6730924-6731027,6731479-6732354
          Length = 775

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
 Frame = +1

Query: 169 VIRQALLGPDAKPDELNV---IQVEAMSLQE-AVKLPVAVLKVGESRH 300
           ++  A+ GP    DE+N    ++  A+ LQ  ++ LP+ +L++G SRH
Sbjct: 239 LVVDAMGGPVDDADEMNREWGVKSRALCLQRNSIVLPLGLLRIGLSRH 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,001,148
Number of Sequences: 37544
Number of extensions: 272162
Number of successful extensions: 560
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)