Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0102
(776 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY334011-1|AAR01136.1| 188|Anopheles gambiae beta-tubulin protein. 135 2e-33
AY334010-1|AAR01135.1| 188|Anopheles gambiae beta-tubulin protein. 135 2e-33
AY334009-1|AAR01134.1| 188|Anopheles gambiae beta-tubulin protein. 135 2e-33
AY334008-1|AAR01133.1| 188|Anopheles gambiae beta-tubulin protein. 135 2e-33
U50468-1|AAA93472.1| 91|Anopheles gambiae protein ( Anopheles ... 41 4e-05
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 24 0.38
AF002238-1|AAB97731.1| 327|Anopheles gambiae ribosomal protein ... 24 6.0
>AY334011-1|AAR01136.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 135 bits (326), Expect = 2e-33
Identities = 61/157 (38%), Positives = 93/157 (59%)
Frame = +2
Query: 305 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 484
HYT G E+VD VLD +RK + C LQGF + H LL+ ++ +Y +
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60
Query: 485 LEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 664
+++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + P+Y +
Sbjct: 61 NTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKVPNPSYGD 120
Query: 665 LNRLIGQIVSSITASLKFDGALNVDLTEFXTNLXXYP 775
LN L+ +S +T L+F G LN DL + N+ +P
Sbjct: 121 LNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFP 157
>AY334010-1|AAR01135.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 135 bits (326), Expect = 2e-33
Identities = 61/157 (38%), Positives = 93/157 (59%)
Frame = +2
Query: 305 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 484
HYT G E+VD VLD +RK + C LQGF + H LL+ ++ +Y +
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60
Query: 485 LEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 664
+++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + P+Y +
Sbjct: 61 NTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKVPNPSYGD 120
Query: 665 LNRLIGQIVSSITASLKFDGALNVDLTEFXTNLXXYP 775
LN L+ +S +T L+F G LN DL + N+ +P
Sbjct: 121 LNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFP 157
>AY334009-1|AAR01134.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 135 bits (326), Expect = 2e-33
Identities = 61/157 (38%), Positives = 93/157 (59%)
Frame = +2
Query: 305 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 484
HYT G E+VD VLD +RK + C LQGF + H LL+ ++ +Y +
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60
Query: 485 LEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 664
+++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + P+Y +
Sbjct: 61 NTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKVPNPSYGD 120
Query: 665 LNRLIGQIVSSITASLKFDGALNVDLTEFXTNLXXYP 775
LN L+ +S +T L+F G LN DL + N+ +P
Sbjct: 121 LNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFP 157
>AY334008-1|AAR01133.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 135 bits (326), Expect = 2e-33
Identities = 61/157 (38%), Positives = 93/157 (59%)
Frame = +2
Query: 305 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 484
HYT G E+VD VLD +RK + C LQGF + H LL+ ++ +Y +
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60
Query: 485 LEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 664
+++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + P+Y +
Sbjct: 61 NTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKVPNPSYGD 120
Query: 665 LNRLIGQIVSSITASLKFDGALNVDLTEFXTNLXXYP 775
LN L+ +S +T L+F G LN DL + N+ +P
Sbjct: 121 LNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFP 157
>U50468-1|AAA93472.1| 91|Anopheles gambiae protein ( Anopheles
gambiae putativetubulin alpha chain mRNA, complete cds.
).
Length = 91
Score = 41.1 bits (92), Expect = 4e-05
Identities = 26/68 (38%), Positives = 28/68 (41%)
Frame = +3
Query: 42 PAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTYPVXXXXXXXXXXXXXX 221
P T WS AS+ RCP+TR S ST SS R AST PV
Sbjct: 19 PCWDCTVWSMASNRTVRCPRTRRSEAVMTRSTPSSPRLAQASTCPVPCSSIWSRPSSMRC 78
Query: 222 XXAHTDSC 245
A T SC
Sbjct: 79 APARTASC 86
>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
protein.
Length = 1248
Score = 23.8 bits (49), Expect(2) = 0.38
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 93 CPQTRPSGVETILSTLSSARPELAS 167
C RPS ++ ++ S RP+LA+
Sbjct: 164 CGSARPSRIDVAFASPSICRPDLAA 188
Score = 22.2 bits (45), Expect(2) = 0.38
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 21 RXSXSVMPAGSFTAWSTASSLMARCPQTRPSGV 119
R V+ AG F AW TA +T+P G+
Sbjct: 111 RGHPRVLLAGDFNAWHTAWG----SERTKPKGI 139
>AF002238-1|AAB97731.1| 327|Anopheles gambiae ribosomal protein L5
protein.
Length = 327
Score = 23.8 bits (49), Expect = 6.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 143 RKC*KNRLHPRWSCLWASGHQAGCRAPGSKAPSRHYRXGLPAWP 12
RK +R +PR + G CR+P ++ SR R +WP
Sbjct: 248 RKIPPSRRNPRRRSPRSGGRWPSCRSPPARRRSRSTRP--TSWP 289
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 806,032
Number of Sequences: 2352
Number of extensions: 17053
Number of successful extensions: 45
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81081585
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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