Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0099
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    31   0.22 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    29   0.67 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.89 
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    28   1.6  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   2.7  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    26   4.7  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    26   6.3  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    26   6.3  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   8.3  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 425 RIHLCSLVYHYRTILFQCNLRCHKPIYXQDK*VRPFS--RLVKLFVAXXVCHSCSLYP 258
           R  L  LV + ++I F+C  RC +  Y       P S  R +  F+   VC+ CS++P
Sbjct: 300 RESLSILVNYCKSIRFRC-FRCRRVEYFFYLDSNPLSIQRTITHFIKKLVCNECSMHP 356


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
 Frame = -1

Query: 522 PSAEQKQSGRTXWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLP-QANL 346
           PS+    S  +    S S +   SSS+  + SS SS  S     ++S S  S +P  ++ 
Sbjct: 155 PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSST 214

Query: 345 XSGQIGSSVFKIGKTFRGXXSLSQLFTLPFQSQVCLSRSKANP 217
            S    SS      +     S S  F     S   +S     P
Sbjct: 215 SSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTP 257


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
 Frame = -1

Query: 525 VPSAEQKQSGRTXWL-GSQSGALFGSSSTVQAFSSDSSLQSGLP------LQNNSFSMQS 367
           +PS     S  +  L  S S +   SSS+  +  S SS  S  P      + ++S S  S
Sbjct: 240 IPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSS 299

Query: 366 PL-PQANLXSGQIGSSVFKIGKTFRGXXSLSQLFTLPFQSQVCLSRSKANP 217
           P    + + S    SS F    +     S S   + P  S   +S S ++P
Sbjct: 300 PTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSP 350


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/55 (21%), Positives = 22/55 (40%)
 Frame = +2

Query: 401 KPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFCSADGTRIPGGIEPNQVPQ 565
           +P   D     A     DP++ P+ +P+          A    +  G+ P +VP+
Sbjct: 243 RPHPSDTIPPGASMARSDPSQVPESNPSAAAAVAAAAVAAAANLTNGVNPPEVPR 297


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 164 RDVVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNN 274
           R++ +CT S   Q  CPS LA  LDK   +   KV++
Sbjct: 142 RELQKCTASYYHQNACPSSLA--LDKSISEAFAKVDH 176


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 23/79 (29%), Positives = 31/79 (39%)
 Frame = -1

Query: 453 SSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLXSGQIGSSVFKIGKTFRGXXSLSQ 274
           SSS+V   SS S L S      +S S  SPL  ++  S    S +  +  +     S S 
Sbjct: 36  SSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSS 95

Query: 273 LFTLPFQSQVCLSRSKANP 217
                  S    S S A+P
Sbjct: 96  ASLTSSSSATLTSSSSASP 114


>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -1

Query: 264 LPF-QSQVCLSRSKANPDGQVICLRPDLVHLTTSRQSXSVVRRKYSSAGL----PSHN 106
           +PF +S   LSR+      Q  C    LV  ++   S S+V+R Y S+ +    P HN
Sbjct: 1   MPFIESMAPLSRAITRGISQFSCYSNTLVLRSSRNSSSSLVKRSYVSSRVSPKKPQHN 58


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = +2

Query: 491 VLPDCFCSADGTRIPGGIEPNQVPQMXTITFNGAVNVDNIDLYXQIFNGNRHNPN 655
           +LP        T  PG ++   VP +  I F+GA N +      +  N  R   N
Sbjct: 258 MLPHVQNGVKNTSWPGRLDIRSVPSLGDILFDGAHNKEAAIELAKFVNSQRREHN 312


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 182 TRSGLKQITCPSGLAFDLDKQTCDWKGKV 268
           TRS   ++  P  +  +LDKQT D K KV
Sbjct: 461 TRSAPGELVKPQEVIQELDKQTSDIKDKV 489


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 413 KDESDENACTVELDPNRAPDCDPNXCVLPDCFCSAD 520
           K +SD     VELD     + DP+  VLP+   ++D
Sbjct: 295 KSKSDRRKRLVELDAENENENDPSDFVLPNGQSNSD 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,141
Number of Sequences: 5004
Number of extensions: 54692
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)