Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0099
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    32   0.40 
09_04_0426 - 17451731-17451886,17451974-17452079,17452289-174523...    31   0.93 
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266...    30   2.1  
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982...    29   4.9  
03_02_0803 + 11365959-11366390,11366470-11366502,11367158-113672...    29   4.9  
11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764     28   6.5  

>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
            14058450-14058570,14058926-14059320,14059410-14059534,
            14059646-14059876,14060012-14060484,14060587-14060693,
            14060842-14061172,14061222-14061250,14061345-14061901,
            14062170-14062255,14062344-14062406,14062646-14063001,
            14063101-14063356
          Length = 1272

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +2

Query: 377  EKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFCSADGTRIPGGIEPNQ 556
            +++L C+G  D KD S+  AC   +D N      P  C +   +    G R+   I  N+
Sbjct: 1002 QQKLSCSGDEDTKDSSNSIACEAIIDVNTV----PVTCSVSSVYEIGKGIRV---INLNE 1054

Query: 557  VPQMXTITFNGA-VNVDNIDL 616
               +  +  N + VN   +DL
Sbjct: 1055 ADNLVDVDINSSEVNSGTVDL 1075


>09_04_0426 -
           17451731-17451886,17451974-17452079,17452289-17452387,
           17452782-17452888,17452985-17453230,17454187-17454461,
           17454834-17454886,17455163-17455455
          Length = 444

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +2

Query: 374 IEKELFCNGKPDCK-DESDENACTVELDPNRAPDCDPNXCVLPDCFCSADGTRIPGGIEP 550
           I  E+  N   +C+   SD  AC+  +D   + + DP     P C  + DG   P  I P
Sbjct: 232 ISDEVLANITKNCRFSPSDGKACSDAMDAFDSGNTDPYDIYGPVCINAPDGKFFPSRIVP 291

Query: 551 NQVP 562
              P
Sbjct: 292 GYDP 295


>07_01_0362 -
           2667031-2667090,2667182-2667426,2667749-2669471,
           2669578-2669921,2670544-2670667,2671350-2671599,
           2672486-2672571
          Length = 943

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +3

Query: 105 SCATVDPPMNISVSPPXVTAAMSSGALGQVLNR*LARLDWL 227
           S A  DPP   S SPP    A S+GA         A +DWL
Sbjct: 9   SAAPPDPPPR-SASPPATPVASSAGASSPPAQTNAASIDWL 48


>05_07_0305 -
           29097478-29097598,29097766-29097866,29098136-29098288,
           29098404-29098542,29098649-29098719,29099022-29099333,
           29099605-29099903,29100011-29100271,29100365-29100471,
           29100588-29100739,29100816-29100970,29102946-29103141,
           29103340-29103468,29103540-29103641,29103736-29103889,
           29103970-29104058
          Length = 846

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 422 SDENACTVELDPNRAPDCDPNXCVLP 499
           S EN   +++DP+    C P+ C+LP
Sbjct: 248 SRENELPLKVDPSNCKHCTPSYCLLP 273


>03_02_0803 +
           11365959-11366390,11366470-11366502,11367158-11367214,
           11367784-11367945,11367987-11368139,11368218-11368295,
           11368377-11368469,11368981-11369071,11369091-11369209
          Length = 405

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 329 VRPFSRLVKLFVAXXVCHSCSLYPSSR 249
           ++PF     L V   +CH C+LYP+++
Sbjct: 202 LKPFKVCFILLVMEKMCHVCNLYPNNK 228


>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
          Length = 515

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +2

Query: 152 EXDCRDVVRCTRSGLKQITCPSGLAFDLDKQTCDWKG 262
           E DC DV  C R       C     FD D  TC W G
Sbjct: 177 ECDC-DVCCCRRGFCNLCMCVVCNGFDFDVNTCRWIG 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,194,309
Number of Sequences: 37544
Number of extensions: 378327
Number of successful extensions: 999
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)