Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0099
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 92 4e-19
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 2e-11
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 47 1e-05
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 47 1e-05
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 45 5e-05
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 45 5e-05
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 44 9e-05
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 44 1e-04
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 44 2e-04
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 43 2e-04
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 43 3e-04
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 42 4e-04
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 42 4e-04
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 42 4e-04
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 42 7e-04
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 41 0.001
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 41 0.001
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 40 0.003
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 40 0.003
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 38 0.008
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 37 0.014
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 37 0.019
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 36 0.025
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.044
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.058
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.058
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 35 0.058
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.058
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 35 0.077
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 34 0.10
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16) 34 0.13
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 33 0.23
SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064) 32 0.41
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 32 0.41
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15) 32 0.41
SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17) 32 0.54
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0) 32 0.54
SB_4518| Best HMM Match : CBM_14 (HMM E-Value=0.019) 32 0.54
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 31 0.95
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 30 2.2
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 29 3.8
SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18) 29 3.8
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_38846| Best HMM Match : Cache (HMM E-Value=2.7e-09) 28 8.8
SB_5369| Best HMM Match : wnt (HMM E-Value=2.9e-18) 28 8.8
SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 92.3 bits (219), Expect = 4e-19
Identities = 40/81 (49%), Positives = 54/81 (66%)
Frame = +2
Query: 464 APDCDPNXCVLPDCFCSADGTRIPGGIEPNQVPQMXTITFNGAVNVDNIDLYXQIFNGNR 643
A C P+ C LP+CFCS G +PGG+ P ++PQM +TF+ A+N +Y +IFNG +
Sbjct: 566 AERCHPDVCKLPNCFCS--GALVPGGLNPKEIPQMIMLTFDDAINGQVYPVYQKIFNGKK 623
Query: 644 HNPNGXQIKGTFFVSHKXTNY 706
NPNG I+ TFFVSH+ T Y
Sbjct: 624 -NPNGCDIRATFFVSHEYTQY 643
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 70.1 bits (164), Expect = 2e-12
Identities = 36/83 (43%), Positives = 44/83 (53%)
Frame = +2
Query: 458 NRAPDCDPNXCVLPDCFCSADGTRIPGGIEPNQVPQMXTITFNGAVNVDNIDLYXQIFNG 637
N A CD C P+C CS D + PGG+ P PQ+ ITF+ + V N + Y G
Sbjct: 25 NVAEKCDLEKCQPPNCRCS-DDFQPPGGLSPALTPQIIMITFDDDITVINYEQYKDAVKG 83
Query: 638 NRHNPNGXQIKGTFFVSHKXTNY 706
NPNG I TFF+SH TNY
Sbjct: 84 FT-NPNGCPITATFFISHNYTNY 105
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 66.9 bits (156), Expect = 2e-11
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +2
Query: 521 GTRIPGGIEPNQVPQMXTITFNGAVNVDNIDLYXQIFNGNRHNPNGXQIKGTFFVSHKXT 700
G +P G++P Q+PQM +TF+ A+N+ Y + N + NPNG ++ TFFVSH+ T
Sbjct: 1553 GASVPNGLDPKQIPQMIMLTFDDAINMQVFPFYQTLLNDTK-NPNGCNVRATFFVSHEYT 1611
Query: 701 NY 706
+Y
Sbjct: 1612 DY 1613
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 47.6 bits (108), Expect = 1e-05
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFCS 514
C K AC SG+CI+ C+G DCKD SDE+ C + + C CV C
Sbjct: 1155 CLSSKFACESGECIDVVGLCDGTDDCKDASDESRCDHKCSKDEY-QCVSGACVKWPLTCD 1213
Query: 515 A-----DGTRIPG 538
DGT PG
Sbjct: 1214 GKKDCEDGTDEPG 1226
Score = 36.7 bits (81), Expect = 0.019
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +2
Query: 305 LPILKTDEPICPEX--KLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCD 478
LP+ CP+ + C +G C+ ++L C+G C D SDE C L A C+
Sbjct: 1107 LPVHSVPGFRCPDKSTQFQCVNGQCVSRDLICDGDNACLDFSDEANCKC-LSSKFA--CE 1163
Query: 479 PNXCVLPDCFCSADGT 526
C+ D DGT
Sbjct: 1164 SGECI--DVVGLCDGT 1177
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFCS 514
C + C +G CI +E C+ + DC D SDE C PN C C+ C
Sbjct: 2457 CDVTQFRCKTGTCITREWRCDHQDDCGDGSDEQQCVNYTCPNHTFKCTSGHCIANSSVCD 2516
Query: 515 AD 520
D
Sbjct: 2517 GD 2518
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVEL-DPNRAPDCDPNXCV 493
CP K C +G CI K C+G+ DC D SDE + C+ + DP C C+
Sbjct: 47 CPPTKFLCANGMCIPKSAVCDGENDCGDMSDEPSNCSAHICDPKLEFQCANGRCI 101
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 2/100 (2%)
Frame = +2
Query: 227 FDLDKQTCDWKGKVNNCDKLXKPRKVLPILKTDEPICPEXKLACGSGDCIEKELFCNGKP 406
F D C ++ +V CD + R C + C SG CI ++ C+G
Sbjct: 3012 FRCDNFRCVYRSRV--CDGIDDCRDGSDERNCHVTTCTADQFRCPSGRCISRDWLCDGDN 3069
Query: 407 DCKDESDENA--CTVELDPNRAPDCDPNXCVLPDCFCSAD 520
DC D SDE A C V +A C+ + C +
Sbjct: 3070 DCGDSSDEKAGECHVTCPAGQARCATGRRCIPSEWRCDGE 3109
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 326 EPICPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDPNXCVLPD 502
E CP + C +G C+ + C+G+ DC D SDE C P + N C+
Sbjct: 2245 EVTCPAHEFTCPNGRCVSYDFLCDGEDDCGDFSDELRCPPTTCVPGQVKCGSKNLCIPSS 2304
Query: 503 CFC 511
C
Sbjct: 2305 WLC 2307
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFCS 514
C +C +G CI + C+ + DC D SDE C P C CV D C
Sbjct: 2209 CEPGHFSCNNGRCINAKWVCDRENDCGDNSDEARCPEVTCPAHEFTCPNGRCVSYDFLCD 2268
Query: 515 AD 520
+
Sbjct: 2269 GE 2270
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 332 IC-PEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
IC P+ + C +G CI K+ C+G DC D SDE+ C
Sbjct: 86 ICDPKLEFQCANGRCINKKWRCDGMKDCADGSDESTC 122
Score = 41.5 bits (93), Expect = 7e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENA 436
C + AC SG C+ K C+G DC D SDE++
Sbjct: 2168 CASSEFACESGQCVRKSFVCDGDNDCHDGSDESS 2201
Score = 41.1 bits (92), Expect = 9e-04
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
CP C SG CI C+G DC D SDE C
Sbjct: 2496 CPNHTFKCTSGHCIANSSVCDGDTDCADGSDEKDC 2530
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +2
Query: 209 CPSGLAFD-LDKQTCDWKGKVNNCDKLXKPRKVLPILKTDEPICPEXKLACGSGDCIEKE 385
CP G+A D LD +TC+ K V+P P C K C +G CI
Sbjct: 799 CPYGMALDQLDNKTCE------------KNFTVIPT-----PPCSAGKFTCKNGHCISLR 841
Query: 386 LFCNGKPDCKDESDEN 433
C+G+ DC D SDE+
Sbjct: 842 WKCDGENDCVDNSDED 857
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 335 CPEXKLACGSG-DCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC-DPNXCVLPDCF 508
C + AC +G CI+++ C+G+ DC D SDE C +E N C + + C+
Sbjct: 1087 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQV 1146
Query: 509 C 511
C
Sbjct: 1147 C 1147
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/62 (29%), Positives = 24/62 (38%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFCS 514
C C + C+ + C+G DC+D SDE C V C C+ D C
Sbjct: 3007 CAPYHFRCDNFRCVYRSRVCDGIDDCRDGSDERNCHVTTCTADQFRCPSGRCISRDWLCD 3066
Query: 515 AD 520
D
Sbjct: 3067 GD 3068
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCV 493
C + + +C G CI + C+G DC D SDE P R C + CV
Sbjct: 3207 CADGQFSCDDGLCIARAWKCDGMMDCADASDEKGSGHRWCPQRLYQCINHVCV 3259
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCV 493
C + + C SG CI C+ DC D SDE C + CD C+
Sbjct: 3168 CAKHQYRCASGRCISASWVCDHVNDCGDGSDEQQCINRTCADGQFSCDDGLCI 3220
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDE 430
C + AC +G CI L C+G DC D SDE
Sbjct: 2370 CTGAQFACDNGRCISTRLLCDGDNDCGDNSDE 2401
Score = 36.7 bits (81), Expect = 0.019
Identities = 45/175 (25%), Positives = 59/175 (33%), Gaps = 7/175 (4%)
Frame = +2
Query: 89 EPNADQLCDGRPADEYFRLTTEXDC---RDVVRCTR--SGLKQITCPSGLAFDLDKQTCD 253
EP +GR + + E DC D RC + TCP+G D CD
Sbjct: 2210 EPGHFSCNNGRCINAKWVCDRENDCGDNSDEARCPEVTCPAHEFTCPNGRCVSYDF-LCD 2268
Query: 254 WKGKVNNCDKLXKPRKVLPILKTDEPICPEXKLACGSGD-CIEKELFCNGKPDCKDESDE 430
+ ++C + P C ++ CGS + CI C+G DC D DE
Sbjct: 2269 GE---DDCGDFSDELRCPPTT------CVPGQVKCGSKNLCIPSSWLCDGSDDCGDGWDE 2319
Query: 431 NACTVELDPNRAP-DCDPNXCVLPDCFCSADGTRIPGGIEPNQVPQMXTITFNGA 592
E N + C CV C D EP Q T GA
Sbjct: 2320 RQDCRERPCNVSEFRCTSGECVPASWRCDGDNDCTDKSDEPTDC-QRSNATCTGA 2373
Score = 36.7 bits (81), Expect = 0.019
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDE--NACTVELDPNRAPDCDPNXCV 493
CP+ C + C+++ C+ DC D SDE C + N CD N C+
Sbjct: 3246 CPQRLYQCINHVCVDRRWLCDDMDDCGDYSDELRLLCRYSICRNSHFRCDNNKCI 3300
Score = 35.9 bits (79), Expect = 0.033
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C C +G C ++ C+G DC D SDE C
Sbjct: 910 CSASMFRCANGQCKPRDWVCDGFDDCGDGSDEKGC 944
Score = 35.9 bits (79), Expect = 0.033
Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 7/145 (4%)
Frame = +2
Query: 98 ADQL-C-DGRPADEYFRLTTEXDCRDVVRCTRSGLKQITCPSGLAFDLDKQTC---DWK- 259
ADQ C GR + + DC D ++G +TCP+G A + C +W+
Sbjct: 3048 ADQFRCPSGRCISRDWLCDGDNDCGDSSD-EKAGECHVTCPAGQARCATGRRCIPSEWRC 3106
Query: 260 GKVNNCDKLXKPRKVLPILKTDEPICPEXKLACGSGD-CIEKELFCNGKPDCKDESDENA 436
++C+ T C C S CI + C+G+ DC D SDE
Sbjct: 3107 DGESDCEDGSDENSAQCTAIT----CSAETFRCYSDRRCIPNQWKCDGESDCNDGSDEKG 3162
Query: 437 CTVELDPNRAPDCDPNXCVLPDCFC 511
C + C C+ C
Sbjct: 3163 CPPKQCAKHQYRCASGRCISASWVC 3187
Score = 35.5 bits (78), Expect = 0.044
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP---DCDPNXCVLPDC 505
C + C SG+C+ C+G DC D+SDE + CD C+
Sbjct: 2328 CNVSEFRCTSGECVPASWRCDGDNDCTDKSDEPTDCQRSNATCTGAQFACDNGRCISTRL 2387
Query: 506 FCSAD 520
C D
Sbjct: 2388 LCDGD 2392
Score = 32.7 bits (71), Expect = 0.31
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVEL-DPNRAPDCDPNXCV 493
C C + CI + C+G+ DC D SDE ++C V + P D C+
Sbjct: 2926 CTNNDFMCDNYRCISRLWRCDGEDDCGDGSDEPDSCPVRVCKPGTYQCADNRKCI 2980
Score = 31.1 bits (67), Expect = 0.95
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +2
Query: 335 CPEXKLACG-SGDCIEKELFCNGKPDCKDESDENACT 442
C + C S CI C+ DC D SDE CT
Sbjct: 1047 CHSTEFQCETSSRCIPLRFVCDADDDCGDRSDERNCT 1083
Score = 31.1 bits (67), Expect = 0.95
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 6/125 (4%)
Frame = +2
Query: 74 DGAGDEPNADQLC-DGR-PADEYFRLTTEXDCRDVVRCT----RSGLKQITCPSGLAFDL 235
DG+ ++ ++ C DG+ D+ + C ++ C G CP L +
Sbjct: 3195 DGSDEQQCINRTCADGQFSCDDGLCIARAWKCDGMMDCADASDEKGSGHRWCPQRLYQCI 3254
Query: 236 DKQTCDWKGKVNNCDKLXKPRKVLPILKTDEPICPEXKLACGSGDCIEKELFCNGKPDCK 415
+ D + ++ D L +L IC C + CI K C+G C
Sbjct: 3255 NHVCVDRRWLCDDMDDCGDYSDELRLL-CRYSICRNSHFRCDNNKCIPKWNVCDGVYHCT 3313
Query: 416 DESDE 430
D+SDE
Sbjct: 3314 DKSDE 3318
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 335 CPEXKLACGSGD-CIEKELFCNGKPDCKDESDE 430
C + C + CI K C+G+ DC D SDE
Sbjct: 1127 CGNDRWRCSNTSRCIAKSQVCDGRVDCPDASDE 1159
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 326 EPICPEXKLAC-GSGDCIEKELFCNGKPDCKDESDENACTVELD 454
E C + C G+ CI C+G DC D DE + ++LD
Sbjct: 124 EGTCRPDEWHCIGTSRCIPLSRVCDGTNDCGDNYDEGSHCLDLD 167
Score = 29.9 bits (64), Expect = 2.2
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Frame = +2
Query: 80 AGDEPNADQLCDGRPADEYFRLTTEXDC-RDVVRCTRSGLKQITCPSGLAFDLDKQTCDW 256
+G+ A CDG D + DC R CT + Q C +G + CD
Sbjct: 2337 SGECVPASWRCDG-DNDCTDKSDEPTDCQRSNATCTGA---QFACDNGRCIST-RLLCDG 2391
Query: 257 KGKVNNC-DKLXKPRKVLPILKTDEPICPEXKLACGSGD-CIEKELFCNGKPDCKDESDE 430
N+C D + P ++ C + + +C S C+ C+G+ DC D SDE
Sbjct: 2392 D---NDCGDNSDETTLQFPCVRHRN--CTQSEYSCRSTSRCVPLAFVCDGENDCGDGSDE 2446
Query: 431 N 433
+
Sbjct: 2447 S 2447
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C + + C + C+ C+ DC D SDE C
Sbjct: 3330 CRKDQFKCLNRRCVPVRAVCDSNDDCGDISDELQC 3364
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
CP K C G CI++ CNGK DC D SDE C
Sbjct: 4 CPGSKYECRDGTCIDRNEHCNGKIDCPDASDEKGC 38
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/72 (31%), Positives = 28/72 (38%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFCS 514
C + C G C+ FCNG+ DC D SDE +C A C CV C+
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSCDNSCSSRHA--CADGTCVTWSLTCN 131
Query: 515 ADGTRIPGGIEP 550
G EP
Sbjct: 132 GVSDCQDGSDEP 143
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFCS 514
C + C +G C+ +E+ C+G C D SDE C + PD CV P FC+
Sbjct: 38 CHGDQFQCLNGMCVGQEVRCDGDYACVDHSDERNCACRSAEFKCPD---GKCVHPSKFCN 94
Query: 515 ADGTRIPGGIE 547
+ G E
Sbjct: 95 GESDCTDGSDE 105
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +2
Query: 353 ACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCV 493
AC G C+ L CNG DC+D SDE + D R P P C+
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDEPKLCGKHDTMRPPPW-PRPCI 162
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/72 (31%), Positives = 28/72 (38%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFCS 514
C + C G C+ FCNG+ DC D SDE +C A C CV C+
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSCDNSCSSRHA--CADGTCVTWSLTCN 131
Query: 515 ADGTRIPGGIEP 550
G EP
Sbjct: 132 GVSDCQDGSDEP 143
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/71 (32%), Positives = 31/71 (43%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFCS 514
C + C +G C+ +EL C+G C D SDE C + PD CV P FC+
Sbjct: 38 CHGDQFQCLNGMCVGQELRCDGDYACVDHSDERNCACRSAEFKCPD---GKCVHPSKFCN 94
Query: 515 ADGTRIPGGIE 547
+ G E
Sbjct: 95 GESDCTDGSDE 105
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 44.4 bits (100), Expect = 9e-05
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNR 463
C + C +G CI+ C+G DC+D SDE C + L P R
Sbjct: 130 CDPSQHTCNNGQCIKASWLCDGASDCQDNSDEMNCPLTLAPGR 172
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 314 LKTDEPICPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP-DCDPNXC 490
L T + P C +G C+ KE C+G DC D SDE+ C P R P C P+
Sbjct: 294 LSTAKTCNPVTDHTCRNGRCVLKEWLCDGMDDCGDSSDEDNC-----PTRPPYTCPPSDF 348
Query: 491 VLPDCFCSADGTRIPG 538
+ C + R G
Sbjct: 349 TCANSQCVPNSFRCDG 364
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC--TVELDPNRAPDCDPNXCVLPDCF 508
CP C + C+ C+G+ DC D SDE+ C T N CD C+
Sbjct: 343 CPPSDFTCANSQCVPNSFRCDGENDCGDRSDESGCKPTTTCSANEF-RCDDGRCITSTFR 401
Query: 509 CSAD 520
C +
Sbjct: 402 CDRE 405
Score = 39.1 bits (87), Expect = 0.004
Identities = 39/140 (27%), Positives = 47/140 (33%), Gaps = 3/140 (2%)
Frame = +2
Query: 92 PNADQLC-DGRPADEYFRLTTEXDCRDVVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKV 268
P +D C + + FR E DC D R SG K T S F D C
Sbjct: 344 PPSDFTCANSQCVPNSFRCDGENDCGD--RSDESGCKPTTTCSANEFRCDDGRCITS--T 399
Query: 269 NNCDKLXKPRKVLPILKTDEPICPEXKLACG-SGDCIEKELFCNGKPDCKDESDENACTV 445
CD+ C + C SG CI C+ + DC D SDE C
Sbjct: 400 FRCDREFDCTDRSDERGCVNKTCAPYEFTCAFSGRCIPGRFRCDHRSDCLDGSDEQNCQN 459
Query: 446 ELDPNRAP-DCDPNXCVLPD 502
P P C N + D
Sbjct: 460 VTRPTPPPVKCRKNERMCAD 479
Score = 37.1 bits (82), Expect = 0.014
Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 10/119 (8%)
Frame = +2
Query: 113 DGRPADEYFRLTTEXDCRDVVRCTRSGLKQITCPS---GLAFD----LDKQTCDWKGK-V 268
DGR FR E DC D R G TC AF + CD + +
Sbjct: 392 DGRCITSTFRCDREFDCTD--RSDERGCVNKTCAPYEFTCAFSGRCIPGRFRCDHRSDCL 449
Query: 269 NNCDKLXKPRKVLPILKTDEPI-CPEXKLACGSGD-CIEKELFCNGKPDCKDESDENAC 439
+ D+ P T P+ C + + C G+ C+ + C+G+ DC D SDE C
Sbjct: 450 DGSDEQNCQNVTRP---TPPPVKCRKNERMCADGNGCVHRRWICDGERDCLDGSDEAGC 505
Score = 32.7 bits (71), Expect = 0.31
Identities = 22/72 (30%), Positives = 29/72 (40%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFCS 514
C + C + CI C+G +C D SDE C P+ P P+ P S
Sbjct: 510 CSSDEFTCTNQKCIPLPQKCDGTDNCGDGSDEKMCPT---PSVPP--QPDIAYQP---VS 561
Query: 515 ADGTRIPGGIEP 550
D T PG + P
Sbjct: 562 GDNTTQPGQVCP 573
Score = 32.3 bits (70), Expect = 0.41
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = +2
Query: 332 ICPEXKLACGSGD-CIEKELFCNGKPDCKDESDENAC 439
+CP CGS CI C+ P C DE C
Sbjct: 571 VCPRDHFRCGSSTICIANSKVCDATPHCPHGEDERNC 607
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 44.4 bits (100), Expect = 9e-05
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = +2
Query: 317 KTDEPICPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVL 496
KT C + CG+G CI C+ DC D SDEN C CD C+
Sbjct: 182 KTLSGTCAPGQFKCGNGKCIPSSWKCDHDNDCGDNSDENNCPYSTCNPSQFKCDNGRCIS 241
Query: 497 PDCFCSAD 520
C D
Sbjct: 242 SKWRCDHD 249
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C + C +G CI + C+ DC D SDE C
Sbjct: 227 CNPSQFKCDNGRCISSKWRCDHDNDCGDMSDERNC 261
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2
Query: 335 CPEXKLACGS-GDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFC 511
C C S G CI K C+G+ DC D SDE C ++ +C+ N CV C
Sbjct: 90 CGSRHFKCVSDGKCIPKSWRCDGEMDCPDSSDEEGCVNRTCSSKEFNCN-NQCVPLSWKC 148
Query: 512 SADGTRIPGGIE 547
+ PGG +
Sbjct: 149 DGEKDCRPGGFD 160
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 329 PICPEXKLACG-SGDCIEKELFCNGKPDCKDESDENACTV-ELDPNRAPDCDPNXCVLPD 502
P C + CG G+C+ + L CNG+ DC+D SDE C + + AP VL D
Sbjct: 724 PGCGNGEFYCGVPGECVPQTLRCNGQMDCRDASDEQDCGIPTVTTTSAPQPTKGKTVLGD 783
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Frame = +2
Query: 332 ICPEXKLACGSG-----DCIEKELFCNGKPDCKDES-DENAC 439
+CP CG+G CI K L CNG DC DE+ C
Sbjct: 1529 LCPSGYFYCGTGPKGEISCITKALRCNGIYDCSVTGWDEDGC 1570
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
CP C SG+CI C+GK DC D +DE C
Sbjct: 127 CPSNMFLCPSGECIMGTQLCDGKKDCTDNTDEKNC 161
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFC 511
C + C +G CI K L+C+G C D SDE C P+ C C++ C
Sbjct: 91 CGSGEFQCDNGKCIRKNLYCDGDFACVDGSDETRCEC---PSNMFLCPSGECIMGTQLC 146
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C + C SG+CIE FC+GK DC D DE C
Sbjct: 696 CGLHEFQCSSGECIEVATFCDGKKDCGDGFDETHC 730
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +2
Query: 308 PILKTDEPICPEXKLACGSGDCIEKELFCNGKPD-CKDESDENACTVELDPNRAPDCDPN 484
P++ C + C +G+C+ K CNG D C D SDE+ CT L + C
Sbjct: 650 PVIAEPGYKCLDHLFTCNNGECVTKTSRCNGMRDSCVDGSDESGCTCGLHEFQ---CSSG 706
Query: 485 XCVLPDCFC 511
C+ FC
Sbjct: 707 ECIEVATFC 715
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFCS 514
C E ++ CG+G C+ K C+ DC D +DE C C C+L C
Sbjct: 667 CSENEITCGNGICVVKRWVCDQDDDCGDGTDELNCAPHTCRPNEFTCADKRCILSRWRCD 726
Query: 515 AD 520
D
Sbjct: 727 GD 728
Score = 42.3 bits (95), Expect = 4e-04
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C + C +G+CI K C+G+ DC ++SDEN C
Sbjct: 747 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDENNC 781
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +2
Query: 338 PEXKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDCDPNXCVLPDCFCS 514
P+ + C +G CI + C+ DC D SDE N+C C CV+ C
Sbjct: 628 PDTQFRCTNGRCIPRRWVCDKDDDCHDGSDERNSCATMTCSENEITCGNGICVVKRWVCD 687
Query: 515 ADGTRIPGGIEPNQVP 562
D G E N P
Sbjct: 688 QDDDCGDGTDELNCAP 703
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 332 ICPEXKLACGSG-DCIEKELFCNGKPDCKDESDE--NACTVELDPNRAP 469
IC + + CGS CI + C+G DC + +DE N E N P
Sbjct: 788 ICKDGEFQCGSSKQCIPESKVCDGSVDCTNSADEPDNCFINECKDNNGP 836
Score = 33.1 bits (72), Expect = 0.23
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Frame = +2
Query: 371 CIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDPNXCVLPDCFCSADGTRIPGGIE 547
CI C+G+ DC D SDE C +P+ C C+ C D G E
Sbjct: 599 CIAATWKCDGEDDCGDNSDEINCPKATCNPDTQFRCTNGRCIPRRWVCDKDDDCHDGSDE 658
Query: 548 PNQVPQM 568
N M
Sbjct: 659 RNSCATM 665
Score = 32.3 bits (70), Expect = 0.41
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC--TVELDPNRAPDCDPNXCVLPDCF 508
C + C CI C+G DC D SDE C + + + C C+
Sbjct: 706 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINCPNSSQYCKSSEYQCSTGECIHKSWV 765
Query: 509 CSAD 520
C +
Sbjct: 766 CDGE 769
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNR 463
C C SG+CI +L C+ DC D SDE C V+ DP R
Sbjct: 704 CTPESYKCRSGECISLDLLCDFNKDCLDGSDEENCGVQ-DPGR 745
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 42.3 bits (95), Expect = 4e-04
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 341 EXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDP 457
+ +L C +G C +K +C+G+ DC D SDE C+ +P
Sbjct: 226 DKQLRCDNGRCEDKRWWCDGQDDCNDGSDEKNCSASANP 264
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 42.3 bits (95), Expect = 4e-04
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 12/121 (9%)
Frame = +2
Query: 113 DGRPADEYFRLTTEXDC---RDVVRCTRSGLK--QITCPSGLAFDLDKQTCDWKGKVN-- 271
+GR FR E DC D C+R + Q C + + CD K +
Sbjct: 13 NGRCITRAFRCDDEDDCLDNSDEQGCSRKVCRDDQFQCGTSRKCIRKSKICDGKSDCSGG 72
Query: 272 ----NCDKLXKPRKVLPILKTDEPICPEXKLACGSGD-CIEKELFCNGKPDCKDESDENA 436
NC K P P+ +P C + C +G C+++ C+G DC D SDE
Sbjct: 73 EDEKNCVKPQTPPPTPPL----KPKCRISQRRCDNGSGCVDRMKICDGMRDCADGSDERG 128
Query: 437 C 439
C
Sbjct: 129 C 129
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 332 ICPEXKLACG-SGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDP 481
+C + + CG S CI K C+GK DC DE C P P P
Sbjct: 42 VCRDDQFQCGTSRKCIRKSKICDGKSDCSGGEDEKNCVKPQTPPPTPPLKP 92
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPN-XCVLPDCFC 511
C + C +G CI + C+ + DC D SDE C+ ++ + C + C+ C
Sbjct: 4 CSATEFRCNNGRCITRAFRCDDEDDCLDNSDEQGCSRKVCRDDQFQCGTSRKCIRKSKIC 63
Query: 512 SADGTRIPGGIEPNQV-PQ 565
G E N V PQ
Sbjct: 64 DGKSDCSGGEDEKNCVKPQ 82
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 42.3 bits (95), Expect = 4e-04
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
CP C SG+CI CN + DC D +DE C
Sbjct: 219 CPSNMFLCPSGECIPTTALCNNENDCSDNADERNC 253
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFCS 514
C E + C +G C+++ L C+G C D SDE C+ P+ C C+ C+
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDKACLDGSDEKHCSC---PSNMFLCPSGECIPTTALCN 239
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 41.5 bits (93), Expect = 7e-04
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDE 430
C E + C SGDC+ C+G DC D SDE
Sbjct: 216 CSEEEFPCASGDCVPLTSVCDGSADCSDSSDE 247
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 320 TDEPICPEX-----KLACG-SGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 475
+DE CP ++ C S C+ + L C+GKPDC D SDE C V NR C
Sbjct: 1333 SDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYSDEAHCRVRKSINRNVVC 1390
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 335 CPEXKLAC-GSGDCIEKELFCNGKPDCKDESDENAC 439
C + + C S CI+ C+G PDC D SDE+ C
Sbjct: 1303 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC 1338
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Frame = +2
Query: 335 CPEXKLACGSGD-CIEKELFCNGKPDCKDESDENAC-------TVELDPNRAPDCD 478
C + C D CI C+G+ DC D DE C T L P DC+
Sbjct: 338 CQSNEFYCSKDDRCINIFWKCDGESDCTDGEDEQGCATTAPVITPSLGPPHPGDCN 393
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 335 CPEXKLAC-GSGDCIEKELFCNGKPDCKDESDEN 433
C ++ C SG C++++ C+ DC D +DE+
Sbjct: 120 CTANEVRCKNSGHCVQQQQVCDFTDDCGDGTDED 153
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDCDPNXCVLPDCFC 511
CP + C +G CI C+G DC D SDE +C+ + C C+ C
Sbjct: 10 CPSNRFRCNNGRCIPMSWRCDGDNDCGDMSDEPPSCSGRSCNSGQFSCSNGRCISRSWVC 69
Query: 512 SADGTRIPGGIEPN 553
D G E N
Sbjct: 70 DRDNDCGDGSDERN 83
Score = 39.1 bits (87), Expect = 0.004
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDP 457
C + +C +G C+ L C+G DC D SDE +C P
Sbjct: 103 CRSWEFSCLNGRCVFYRLVCDGVDDCGDSSDEMSCNATATP 143
Score = 35.9 bits (79), Expect = 0.033
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACT 442
C + +C +G CI + C+ DC D SDE C+
Sbjct: 50 CNSGQFSCSNGRCISRSWVCDRDNDCGDGSDERNCS 85
Score = 35.1 bits (77), Expect = 0.058
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP 469
C + C + C+ C+G+ DC D SDE C+ P P
Sbjct: 149 CHYWEFQCANRRCVYNSQRCDGQNDCGDWSDETGCSTPPIPTTCP 193
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = +2
Query: 335 CPEXKLAC---GSGDCIEKELFCNGKPDCKDESDE 430
CP + C SG CI CNG+ DC D DE
Sbjct: 192 CPADWVRCFYNSSGLCISTSWLCNGRVDCPDAWDE 226
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = +2
Query: 143 LTTEXDCRDVVRCTRSGLKQ-ITCPSGLAFDLDKQTCDWKGKVNNCDKLXKPRKVLPILK 319
++T C V C + +Q C SG+ + TC +G V N + ++ + +
Sbjct: 208 ISTSWLCNGRVDCPDAWDEQPAQCRSGIRYMSVDPTCVKRGFVRNTSAI-----MVRVFR 262
Query: 320 TDEPICPEXKLACGSGDCIEKELF-CNGKPDCKDESDENACTVEL 451
+ E A D + ++ C+G DCKD +DE C++ L
Sbjct: 263 PGTSVMGESSAAM---DLMRPDVQRCDGSYDCKDYTDEFNCSMPL 304
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 335 CPEXKLACGSG-DCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC-DPNXCVLPDCF 508
C + AC +G CI+++ C+G+ DC D SDE C +E N C + + C+
Sbjct: 114 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQV 173
Query: 509 C 511
C
Sbjct: 174 C 174
Score = 31.1 bits (67), Expect = 0.95
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +2
Query: 335 CPEXKLACG-SGDCIEKELFCNGKPDCKDESDENACT 442
C + C S CI C+ DC D SDE CT
Sbjct: 74 CHSTEFQCETSSRCIPLRFVCDADDDCGDRSDERNCT 110
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 335 CPEXKLACGSGD-CIEKELFCNGKPDCKDESDE 430
C + C + CI K C+G+ DC D SDE
Sbjct: 154 CGNDRWRCSNTSRCIAKSQVCDGRVDCPDASDE 186
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 371 CIEKELFCNGKPDCKDESDENACTVELDPNR 463
CI+ C+GKP+C D SDEN C ++P+R
Sbjct: 285 CIDISYKCDGKPECADHSDENDCPPLINPDR 315
Score = 39.1 bits (87), Expect = 0.004
Identities = 31/108 (28%), Positives = 43/108 (39%)
Frame = +2
Query: 110 CDGRPADEYFRLTTEXDCRDVVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNNCDKLX 289
CDG+P E + E DC ++ R + I P + G N C L
Sbjct: 292 CDGKP--ECADHSDENDCPPLINPDRCNVIHIYQPRNKKHPFVWKLSRKCGYTNRCT-LN 348
Query: 290 KPRKVLPILKTDEPICPEXKLACGSGDCIEKELFCNGKPDCKDESDEN 433
++ + D P C SG CI + C+GK DC D SDE+
Sbjct: 349 TTQE-----ERDAPCKISSWFKCRSGVCIPPQWICDGKDDCGDRSDES 391
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACT 442
C + C S +CI L C+G DC D SDE CT
Sbjct: 23 CDPGQFECTSSECIPDVLKCDGSEDCADSSDEINCT 58
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 320 TDEPICPEXKLACG-SGDCIEKELFCNGKPDCKDESDENAC 439
T +C + C GDCI C+G DC+ +DE C
Sbjct: 58 TKRSMCRVDQFECLIEGDCIPLSKHCDGTWDCQHGTDEMDC 98
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 329 PICPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
P+C + C G CI+ C+ DC D SDEN C
Sbjct: 2091 PMCQYGQFRCARGSCIDTGRVCDFTDDCGDNSDENNC 2127
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 308 PILKTDEPICPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
P T P C + C +G CI C+ K DC D SDE C
Sbjct: 2541 PPTSTPPPGCNSGEHRCSNGQCINAIQVCDFKKDCSDGSDEATC 2584
Score = 36.7 bits (81), Expect = 0.019
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 329 PICPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
P CP C G CI + L C+ + DC D DE +C
Sbjct: 2244 PPCPFGLFRCTDGSCIMQSLRCDYQNDCSDGLDEASC 2280
Score = 35.9 bits (79), Expect = 0.033
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 356 CGSGDCIEKELFCNGKPDCKDESDENACTV 445
C +G CI+K C+ DC D SDE C +
Sbjct: 3211 CTNGGCIQKSKLCDFTDDCGDNSDEGRCAL 3240
Score = 35.9 bits (79), Expect = 0.033
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 332 ICPEXKLACGSGDCIEKELFCNGKPDCKDESDENACT 442
+C + C G C + C+ DC D SDE +C+
Sbjct: 3619 VCTRSQFRCTRGSCTSSDNVCDFSDDCGDSSDERSCS 3655
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDC--KDESDENAC 439
C + C G CI K C+ + DC D SDE+ C
Sbjct: 4059 CNTDEFKCSRGGCIPKSYLCDYQADCMFNDLSDESKC 4095
Score = 31.5 bits (68), Expect = 0.72
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACT 442
C + C SG CI C+ + DC D S+E T
Sbjct: 2783 CSSNQFRCDSGHCISSSSKCDFETDCCDGSEERNST 2818
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 335 CPEXKLACGS-GDCIEKELFCNGKPDCKDESDENAC 439
C + C + G CI C+ DC D SDE +C
Sbjct: 3425 CNAQQFGCVTDGKCIPLTSVCDFNVDCLDGSDERSC 3460
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 314 LKTDEPICPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVE 448
L + E C K C + CI+ CN + DC+D SDE +C E
Sbjct: 385 LVSSEGPCGPKKFTCQNRQCIDDFKQCNNRQDCRDGSDEISCPPE 429
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +2
Query: 323 DEPICPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCV 493
D P C E + C +G CI+ + C+ +C D SDE C +PN C+ C+
Sbjct: 1342 DCPPCKENQFRCDNGQCIDGDPRCDKYKNCTDGSDELGCAT-CEPNFF-RCNTGKCI 1396
Score = 33.1 bits (72), Expect = 0.23
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +2
Query: 335 CPEXKLACGS--GDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCF 508
C ++C S CI K C+G DC D+SDE C N+ CD C+ D
Sbjct: 1307 CKPNYISCASMKAICIPKMWRCDGMLDCTDKSDEEDCP-PCKENQF-RCDNGQCIDGDPR 1364
Query: 509 C 511
C
Sbjct: 1365 C 1365
Score = 31.9 bits (69), Expect = 0.54
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C C +G CI C+ DC D SDE C
Sbjct: 1383 CEPNFFRCNTGKCISARWQCDQLDDCGDNSDEIGC 1417
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 37.9 bits (84), Expect = 0.008
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C + C + C++++ CN K DC D SDE C
Sbjct: 145 CLASQYVCANSKCVDRDQLCNFKDDCGDNSDELPC 179
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C C +G CI L C+ DC DESDE C
Sbjct: 5 CKAGDFRCANGRCISGALVCDLDDDCGDESDERGC 39
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 335 CPEXKLAC-GSGDCIEKELFCNGKPDCKDESDENAC 439
C + + C S CI+ C+G PDC D SDE+ C
Sbjct: 6 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC 41
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +2
Query: 320 TDEPICPEX-----KLACG-SGDCIEKELFCNGKPDCKDESDENACTVE 448
+DE CP ++ C S C+ + L C+GKPDC D SDE C E
Sbjct: 36 SDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYSDEAHCRGE 84
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 37.1 bits (82), Expect = 0.014
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDE 430
C + C +G+CI K C+G+ DC ++SDE
Sbjct: 592 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDE 623
Score = 32.3 bits (70), Expect = 0.41
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC--TVELDPNRAPDCDPNXCVLPDCF 508
C + C CI C+G DC D SDE C + + + C C+
Sbjct: 551 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINCPNSSQYCKSSEYQCSTGECIHKSWV 610
Query: 509 CSAD 520
C +
Sbjct: 611 CDGE 614
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 37.1 bits (82), Expect = 0.014
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACT 442
C + C +G+CI + C+ DC D SDE AC+
Sbjct: 134 CGSTQFRCRNGNCINRNYVCDKDNDCGDGSDEVACS 169
Score = 36.7 bits (81), Expect = 0.019
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 332 ICPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
+C + K C +G C+ + C+G DC+D +DE C
Sbjct: 98 VCSQFK--CNNGHCVHRNWKCDGSNDCRDGTDEVGC 131
Score = 35.5 bits (78), Expect = 0.044
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Frame = +2
Query: 158 DCRD---VVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNNCDKLXKPRKVLPILKTDE 328
DCRD V C + G Q C +G + + CD K N+C + + +
Sbjct: 121 DCRDGTDEVGCGKCGSTQFRCRNGNCINRN-YVCD---KDNDCGD---GSDEVACSRLNG 173
Query: 329 PICPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C + C + CI C+ DC D SDE+ C
Sbjct: 174 GWCGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 210
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 36.7 bits (81), Expect = 0.019
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 266 VNNCDKLXKPRKVLPILKTDEPI-CPEXKLACGSG-DCIEKELFCNGKPDCKDESDENAC 439
V++CD K PI + DE C K C +G C+ C+ DC D DE+ C
Sbjct: 924 VHDCDD-GSDEKNCPISRRDEEFGCGSDKFTCDNGAKCLPLTWLCDSITDCMDSKDEHNC 982
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 335 CPEXKLACG-SGDCIEKELFCNGKPDCKDESDENACTV 445
C E + AC + C+ K C+ DC D SDE C +
Sbjct: 901 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPI 938
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 335 CPEXKLACGSGD-CIEKELFCNGKPDCKDESDENAC 439
C + C +G CI + C+ DC D+ DE C
Sbjct: 836 CAADRYRCDNGKKCIPLKWICDSVADCDDKRDERNC 871
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 36.3 bits (80), Expect = 0.025
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C + C SG CI C+G +C D SDE+ C
Sbjct: 209 CAPYEFQCTSGHCISGSSRCDGDYNCMDRSDEDGC 243
Score = 32.3 bits (70), Expect = 0.41
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C +L C SG C++ C+G DC+ DE C
Sbjct: 245 CFTNELTCSSGRCVQSINLCDGVRDCEYGLDELRC 279
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 36.3 bits (80), Expect = 0.025
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
CP + C + C+ + C+G DC D SDE C
Sbjct: 21 CPRHEFECENKLCVPRTWLCDGDNDCHDGSDEKNC 55
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDEN 433
C + CG+ CI + C+G DC D SDE+
Sbjct: 65 CGIEEFDCGNSTCIPLTVLCDGLYDCADRSDES 97
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/54 (29%), Positives = 19/54 (35%)
Frame = +2
Query: 392 CNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFCSADGTRIPGGIEPN 553
C+G DC D DE P +C+ CV C D G E N
Sbjct: 2 CDGTVDCPDALDE-IVNCSRCPRHEFECENKLCVPRTWLCDGDNDCHDGSDEKN 54
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 35.5 bits (78), Expect = 0.044
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 209 CPSGLAFDLDKQTCDWKGKVNNCDKLXK-PRKVLPILKTDEPIC 337
CP+GL + + K CDW V +CD+ P P+ T +P C
Sbjct: 1269 CPAGLKWSVKKTACDWPRYV-DCDRTTSTPPTPTPLTPTTKPAC 1311
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 209 CPSGLAFDLDKQTCDWKGKVNNCD-KLXKPRKVLPILKTDEPIC 337
C GL + + K TCDW V +CD K P P T +P C
Sbjct: 814 CSPGLKWSITKTTCDWPRNV-DCDRKTPTPPSPTPPTTTPKPAC 856
Score = 31.5 bits (68), Expect = 0.72
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 209 CPSGLAFDLDKQTCDWKGKVNNCDK 283
CP+GL + + K TCDW V +CD+
Sbjct: 1024 CPAGLKWSVKKTTCDWPRYV-DCDR 1047
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 110 CDGRPADEYFRLTTEXDCRDVVRCTRSGLKQI-TCPSGLAFDLDKQTCDWKGKVNNCDK 283
C +P Y DC +C + CP+GL + + K CDW V +CD+
Sbjct: 888 CKDKPNGHY---ADPRDCSKFYQCDAFHRAFLHRCPAGLKWSVKKTACDWPRYV-DCDR 942
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 209 CPSGLAFDLDKQTCDWKGKVNNCDK 283
CP+GL + + K CDW V +CD+
Sbjct: 1169 CPAGLKWSVKKTACDWPRYV-DCDR 1192
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 35.1 bits (77), Expect = 0.058
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +2
Query: 92 PNADQLCDGRPADEYFRLTTEXDCRDVVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVN 271
P C+ + +Y +C + C+ + CP L FD K C+W KVN
Sbjct: 591 PPKSPFCEEKKNGDY---ADPSNCNGFITCSNGYAYKRDCPFNLKFDTKKLECEWPNKVN 647
Score = 32.7 bits (71), Expect = 0.31
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Frame = +2
Query: 158 DCRDVVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNNCDK--LXKPRKVLPILKTDEP 331
+C V C+ + + CPS L +D K C+W V +C + P P +P
Sbjct: 531 NCNGFVMCSNGYIYYMDCPSNLRYDPAKGRCEWADTV-DCGQRPTISPHPPKPTTMPPQP 589
Query: 332 ICPEXKLA--CGSGDCIEKELFCNGKPDCKD 418
P+ +GD + CNG C +
Sbjct: 590 TPPKSPFCEEKKNGDYADPS-NCNGFITCSN 619
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 110 CDGRPADEYFRLTTEXDCRDVVRCTRSGLKQITCPSGLAFDLDKQTCDW 256
C+GR +Y +C ++C+ CPS L F++ K DW
Sbjct: 731 CEGRKDGDY---VDAVNCNGFIKCSNQLTYYFDCPSNLRFNIKK---DW 773
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 35.1 bits (77), Expect = 0.058
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C + C SG CI C+ +C D SDE+ C
Sbjct: 231 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 265
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C +L C SG C+ C+G DC+ + DE C
Sbjct: 267 CFTNELTCSSGRCVPSINLCDGVKDCEQDLDELRC 301
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 35.1 bits (77), Expect = 0.058
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C + C SG CI C+ +C D SDE+ C
Sbjct: 1104 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 1138
Score = 32.3 bits (70), Expect = 0.41
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C +L C SG C+ C+G DC+ DE C
Sbjct: 1140 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRC 1174
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 35.1 bits (77), Expect = 0.058
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C + C SG CI C+ +C D SDE+ C
Sbjct: 194 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 228
Score = 34.7 bits (76), Expect = 0.077
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 475
C +L C SG C+ C+G DC+ DE C + P + +C
Sbjct: 230 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRCGSSVCPLNSLNC 276
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 34.7 bits (76), Expect = 0.077
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 356 CGSGDCIEKELFCNGKPDCKDESDENACT 442
C +G+CI + C+ DC D SDE AC+
Sbjct: 7 CRNGNCINRNYVCDKDNDCGDGSDEVACS 35
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C + C + CI C+ DC D SDE+ C
Sbjct: 42 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 76
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 338 PEXKLACGSGDCIEKELFCNGKPDCKDESDENACT 442
P+ C +G CI C+ + DC D SDE C+
Sbjct: 8 PDTSFKCDNGRCISATWVCDTENDCGDNSDEMNCS 42
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C + C SG CI C+ +C D SDE+ C
Sbjct: 275 CASYEFQCTSGHCISGSSRCDSDYNCMDSSDEDGC 309
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C +L C SG C+ C+G DC+ DE C
Sbjct: 311 CFTNELTCSSGRCVPSINLCDGVKDCEQGLDELRC 345
>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
Length = 518
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +2
Query: 74 DGAGDEPNADQLCDGRPADEYFRLTTEXDCRDVVRCTRSGLKQITCPSGLAFDLDKQTCD 253
+G N D + R D + + +C V C + TCP GL F+ D CD
Sbjct: 445 EGTPKYSNKDGMFCERNGDGIY--AEKENCYGFVLCGGGIAHKKTCPPGLIFNTDLMVCD 502
Query: 254 WKGKV 268
W +V
Sbjct: 503 WSHEV 507
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 33.5 bits (73), Expect = 0.18
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 356 CGSGDCIEKELFCNGKPDCKDESDENAC 439
C +G I + C+G+ DC+D SDE C
Sbjct: 88 CSNGHLIYRHWRCDGENDCRDGSDETGC 115
Score = 33.1 bits (72), Expect = 0.23
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 335 CPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
C + C +G C+ + C+ DC D SDE C
Sbjct: 118 CSSSQFRCRNGRCVSRSWVCDKDNDCGDGSDEVQC 152
Score = 32.7 bits (71), Expect = 0.31
Identities = 27/105 (25%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Frame = +2
Query: 134 YFRLTTEXDCRD---VVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNNCDKLXKPRKV 304
++R E DCRD C Q C +G CD K N+C
Sbjct: 97 HWRCDGENDCRDGSDETGCGSCSSSQFRCRNGRCVSRS-WVCD---KDNDCGD---GSDE 149
Query: 305 LPILKTDEPICPEXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
+ + C + C + CI + C+ DC D SDE C
Sbjct: 150 VQCNRAGGGWCGAGRYRCDNDRCIPRNWVCDRDNDCGDGSDETGC 194
>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +2
Query: 101 DQLCDGRPADEYFRLTTEXDCRDVVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVN 271
D C +P EY CR + C CP GL ++ + CDW V+
Sbjct: 73 DDFCKYKPDGEY--RDPYDACRGFIHCHNYNASYKPCPGGLLYNEKTKQCDWPRNVD 127
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 335 CPEXKLACG-SGDCIEKELFCNGKPDCKDESDENACTV 445
C E + AC + C+ K C+ DC D SDE C +
Sbjct: 88 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPI 125
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 335 CPEXKLACGSGD-CIEKELFCNGKPDCKDESDENAC 439
C + C +G CI + C+ DC D+ DE C
Sbjct: 23 CAADRYRCDNGKKCIPLKWICDSVADCDDKRDERNC 58
>SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064)
Length = 48
Score = 32.3 bits (70), Expect = 0.41
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Frame = +2
Query: 332 ICPEXKLACGSG-----DCIEKELFCNGKPDCKDES-DENAC 439
+CP CG+G CI K L CNG DC DE+ C
Sbjct: 6 LCPSGYFYCGTGPKGEISCINKALRCNGIYDCSVTGWDEDGC 47
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 32.3 bits (70), Expect = 0.41
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 206 TCPSGLAFDLDKQTCDWKGKVNNCD 280
+CPSGL + + K TCDW V +CD
Sbjct: 145 SCPSGLKWSVTKTTCDWPRYV-DCD 168
>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
Length = 220
Score = 32.3 bits (70), Expect = 0.41
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 206 TCPSGLAFDLDKQTCDWKGKVNNCD 280
+CPSGL + + K TCDW V +CD
Sbjct: 52 SCPSGLKWSVTKTTCDWPRYV-DCD 75
>SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17)
Length = 225
Score = 31.9 bits (69), Expect = 0.54
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 161 CRDVVRCTRSGLKQITCPSGLAFDLDKQTCDW 256
C+ + C+ ++ CP+GL ++ +K+ CDW
Sbjct: 100 CKMYIACSNGIAYEMPCPAGLNWNDEKKYCDW 131
>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 675
Score = 31.9 bits (69), Expect = 0.54
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 6/127 (4%)
Frame = +2
Query: 128 DEYFRLTTEXDCRDVVRCTRSGLK-QITCPSGLAFDLDKQTCDWKGKVNNCDKLXKPRKV 304
D + R + +C ++ +C L +TC G + + C NNCD KP +
Sbjct: 100 DPFKRPPEQREC-ELQKCEELALHCSVTC--GFGYKRREVYCS----TNNCDTARKPTQ- 151
Query: 305 LPILKTDEPICPEXKLACGSGDCIEKELFCNG-----KPDCKDESDENACTVELDPNRAP 469
+LK + P+CP+ +GD + L C G + DC S C P +
Sbjct: 152 --LLKCELPVCPQW----NAGDWGQCSLTCGGGVQTRRIDC--SSSLTKCDHRKKPVESR 203
Query: 470 DCDPNXC 490
C+ C
Sbjct: 204 RCNTEAC 210
>SB_4518| Best HMM Match : CBM_14 (HMM E-Value=0.019)
Length = 86
Score = 31.9 bits (69), Expect = 0.54
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 98 ADQLCDGRPADEYFRLTTEXDCRDVVRCTRSGLKQITCPSGLAFDLDKQTCD 253
A Q C RP Y + R + C++ K + CP G FD + CD
Sbjct: 38 AYQYCATRPDGRY---PAQPSTRGFIVCSKGMTKHVDCPQGQTFDSNLLICD 86
>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 31.1 bits (67), Expect = 0.95
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +2
Query: 101 DQLCDGRPADEYFRLTTEXDCRDVVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNNCD 280
++ C G+ Y DC +C + + CP GL F+ ++CD KVN
Sbjct: 225 EKFCAGKTDGTY---ADPKDCSAYYQCKKGRSFKKFCPDGLKFNALIKSCDEPSKVNCVT 281
Query: 281 KLXKPRKVLPILKTDE 328
K + +K DE
Sbjct: 282 KQRDEEEEEEKVKDDE 297
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 31.1 bits (67), Expect = 0.95
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 329 PICPEXKLACGS-GDCIEKELFCNGKPDCKDESDE 430
P C + C S G CI + C+G DC+D DE
Sbjct: 209 PPCMPGEFKCQSTGRCIPESKVCDGTRDCQDGEDE 243
>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 31.1 bits (67), Expect = 0.95
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +2
Query: 311 ILKTDEPICPEXKLACGSGDCIEKELFCNGKPDCKDESDENACTVEL-DPNRAPDCDP 481
+ + D +C + + C G+C + +C+ +D + CTV +P + C P
Sbjct: 521 VYQPDNTVCDKGRRVCSVGECAKSICTKYALEECQCTADNDLCTVCCKEPGKDDTCTP 578
>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Frame = +2
Query: 230 DLDKQTCDWKGKVNNCDKLXKPRKVLPILKTDEPICPEXK--------LACGSGDCIEKE 385
D+D + D K ++NNC + +P+ P P E K + CG+G IE
Sbjct: 651 DVDGRQVDRKVEINNCPQWSRPKVTRPCQLPPCPPPNEWKTGPWRQCSVTCGTG--IETR 708
Query: 386 LFCNGKPDCKDESDENACTVELDPNRAPDCDPNXC 490
+ +E+AC + P+ C+P C
Sbjct: 709 TVECMDVEQNITQEESACAEKPKPHTTRRCNPGGC 743
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 341 EXKLACGSGDCIEKELFCNGKPDCKDESDENAC 439
E C + + I+ + C+G DC D SDE+ C
Sbjct: 419 ELLFKCDNDNYIQCQWKCDGTDDCGDHSDEDNC 451
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 356 CGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDC 475
CG+G E+ C G +C +++ C V+ P PDC
Sbjct: 2010 CGAGGKRERSRTCQGGSNCPGSANQVEMCDVQRCPLICPDC 2050
>SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18)
Length = 123
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 158 DCRDVVRCTRSGLKQITCPSGLAFDLDKQTCDW 256
+C+ + C+ + CP+GL ++ K+ CDW
Sbjct: 75 NCKMYITCSNKITYERQCPAGLNWNDAKKWCDW 107
>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1680
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 356 CGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDC 475
CG+G E+ C G +C +++ C V+ P PDC
Sbjct: 16 CGAGGKRERSRTCQGGSNCPGSANQVEMCDVQRCPLICPDC 56
>SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 269 NNCDKLXKPRKVLPILKTDEPICPEXKLACGSGDCI 376
NNCD L KP+ + L+TDE + + C S C+
Sbjct: 200 NNCDGLDKPKDLK--LRTDEDLLWILTIKCCSNKCM 233
>SB_38846| Best HMM Match : Cache (HMM E-Value=2.7e-09)
Length = 916
Score = 27.9 bits (59), Expect = 8.8
Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 2/117 (1%)
Frame = +2
Query: 209 CPSGLAFDLDKQTCDWKGKVNNCDKLXKPRKVLPILKTDEPICPEXKLACGSGDCIEK-- 382
C + LD CD + ++N P + L + + P C C EK
Sbjct: 699 CQCPCSSTLDFNYCDSEYPLSNVSICAVPAEALLTSEEKQACVPRDLQKCYDPKCSEKTT 758
Query: 383 ELFCNGKPDCKDESDENACTVELDPNRAPDCDPNXCVLPDCFCSADGTRIPGGIEPN 553
E C G C + C D + A +P + +CF G + PG E N
Sbjct: 759 EGACEGVVGC------SWCV--RDGDGASLSNPFCSPIDECFAGTKGAKSPGAGEGN 807
>SB_5369| Best HMM Match : wnt (HMM E-Value=2.9e-18)
Length = 354
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 65 KHDDGAGDEPNADQLCDGRPADEYFRLTTEXDCRDV-VRCTR 187
K D + +E N D +C GR D + +T CR+V VR +R
Sbjct: 63 KISDDSQEEENCDVMCCGRGYDTHL-ITKRWQCRNVLVRWSR 103
>SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 416 DESDENACTVELDPNRAPDCDPNXCV 493
D+ D+ C +P++ PD D + CV
Sbjct: 410 DQGDQGECVTVPEPDQVPDSDRDECV 435
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,367,088
Number of Sequences: 59808
Number of extensions: 457414
Number of successful extensions: 1489
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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