Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0099
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    30   1.4  
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa...    29   2.4  
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom...    29   4.1  
At4g29720.1 68417.m04232 amine oxidase family protein similar to...    27   9.5  
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ...    27   9.5  

>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -1

Query: 459 FGSSSTVQAFSSDSSL-QSGLPLQNNSFSMQSPLPQANLXSGQIGSSVFKIGKTFRGXXS 283
           FG SS    F S S   Q+     NN F+  +P   +   + Q GSS+F  G T  G   
Sbjct: 8   FGQSSGTSPFGSQSLFGQTSNTSSNNPFAPATPFGTSAPFAAQSGSSIF--GSTSTGVFG 65

Query: 282 LSQLFTLPFQS 250
             Q  + PF S
Sbjct: 66  APQT-SSPFAS 75


>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 997

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -1

Query: 549 GSIPPGIRVPSAEQKQSGRTXWLGSQSGALFGSSSTVQAFSSDSSL--QSGLPLQNNSFS 376
           GS  PG    S     S  T   G+ S  LFGSSS+    +S +     SG    NN+FS
Sbjct: 190 GSSTPGFGASSTPAFGSTNTPAFGASSTPLFGSSSSPAFGASPAPAFGSSGNAFGNNTFS 249


>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to hepatocyte
           growth factor-regulated tyrosine kinase substrate HRS
           isoform 2 [Homo sapiens] GI:9022389; contains Pfam
           profiles PF00790: VHS domain, PF03127: GAT domain
          Length = 671

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 486 WLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQ-NNSFSMQSPLPQANLXSGQIGSSV 319
           W  + + A +   +   A  +D+S  +G  LQ +NSF  ++  PQA   +   G SV
Sbjct: 561 WASTSANAYYTPRANASASYTDTSALAGRSLQQSNSFPTRAGDPQATSTASNSGVSV 617


>At4g29720.1 68417.m04232 amine oxidase family protein similar to
           polyamine oxidase isoform-2 [Homo sapiens] GI:16554963;
           contains Pfam profile PF01593: amine oxidase,
           flavin-containing
          Length = 533

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 3   SVSRCVISWFAGMQYFSCEATSMTTELEMSRTLISCATVDPPMNISVSP 149
           S S+ ++SWFAG +    E  +     +   T ISC T     N +  P
Sbjct: 373 SNSKVLLSWFAGKEALELEKLTDEEIKDAVMTTISCLTGKEVKNDTAKP 421


>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 446

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +2

Query: 275 CDKLXKPRKVLPILKTDEPICPEXKLACGSGDCI-EKELFCNGKPDCKDESDENACTVEL 451
           CDK  K   V+   K    IC   +  C  G     K+ F   +  C   ++E+A  V +
Sbjct: 147 CDKCSKKYAVMSDWKAHSKICGTKEYRCDCGTLFSRKDSFITHRAFCDALAEESARFVSV 206

Query: 452 DP 457
            P
Sbjct: 207 PP 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,670,523
Number of Sequences: 28952
Number of extensions: 302075
Number of successful extensions: 811
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)