Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0092
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331...    31   0.67 
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332...    31   0.67 
03_02_0189 - 6253659-6255380                                           30   2.0  
08_02_0307 - 15612761-15612856,15613879-15613950,15614325-15615290     29   3.5  
09_04_0237 - 15936630-15937250,15937457-15937534,15938874-159389...    29   4.7  
08_02_0405 + 16790720-16791691,16792064-16792135,16794487-167946...    28   6.2  
01_01_0466 + 3444444-3445256                                           28   6.2  

>02_05_0064 -
           25529630-25531440,25531663-25531673,25533113-25533198,
           25533412-25534259,25535385-25535736
          Length = 1035

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +1

Query: 196 LKKDEVCINPYHYNKIDSPALPPILVRRCSEGEVRAPPPYADYHQPILHEHPDVAMQS-- 369
           LK DE   +   + ++    LPP+L+ R ++  + AP        PI+ +  D  +QS  
Sbjct: 583 LKIDESLFSAKSFEEL---GLPPLLIDRLNKEGLTAPTEVQSAAIPIISQKHDAVIQSYT 639

Query: 370 GTGHSALYLEATLAQHVP 423
           G+G +  YL   L++  P
Sbjct: 640 GSGKTLAYLLPILSEIGP 657


>01_01_0447 -
           3327727-3328144,3328438-3328688,3328820-3328909,
           3329061-3329159,3329240-3329353,3329450-3329555,
           3329661-3329740,3329913-3330173,3330271-3330507,
           3330635-3330922
          Length = 647

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +1

Query: 247 SPALPPILVRRCSEGEVRAPPPYADYHQPILHEHPDVAMQSGTG 378
           SPAL P +V+    G  R   P      P+L  H DVA+ + TG
Sbjct: 27  SPALSPEVVKALKGGGFRRCTPVQAAAIPLLLSHKDVAVDAATG 70


>03_02_0189 - 6253659-6255380
          Length = 573

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +1

Query: 196 LKKDEVCINPYHYNKIDSPALPPILVRRCSEGEVRAPPPYADYHQPILHEHPDVAMQS-- 369
           LK DE   +   + ++    LPP+L+ R ++  +  P        PI+ +  D  +QS  
Sbjct: 121 LKIDESLFSAKSFEEL---GLPPLLIDRLNKEGLSTPTEVQSAAIPIISQKHDAVIQSYT 177

Query: 370 GTGHSALYLEATLAQHVP 423
           G+G +  YL   L++  P
Sbjct: 178 GSGKTLAYLLPILSEIGP 195


>08_02_0307 - 15612761-15612856,15613879-15613950,15614325-15615290
          Length = 377

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
 Frame = +3

Query: 396 RGYTCTTRAGQH--NCTRELLNSGDSAPRLHQRRWR--PDG 506
           R Y C   A  H  +CT      G   PR H RRW   P+G
Sbjct: 45  RDYICFRAACHHWRSCTASPCGRGVVVPRFHPRRWMMLPEG 85


>09_04_0237 -
           15936630-15937250,15937457-15937534,15938874-15938973,
           15940414-15942278
          Length = 887

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +1

Query: 190 YQLKKDEVCINPYHYNKIDSPALPPILVRRCSEGEVRAPPPYADYHQPILHEHPDVAMQS 369
           YQ +++E C   + Y K+ +P LPPI V   +    R    +        H HP  + Q+
Sbjct: 700 YQAREEESC-RQHLYTKVVNPHLPPIAVSATNTASCR----HEGVATATAHTHPRTSTQA 754


>08_02_0405 +
           16790720-16791691,16792064-16792135,16794487-16794621,
           16794630-16794758
          Length = 435

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
 Frame = +3

Query: 396 RGYTCTTRAGQH--NCTRELLNSGDSAPRLHQRRWR--PDG 506
           R Y C   A  H  +CT      G   PR H RRW   P+G
Sbjct: 49  RDYICFRAACHHWRSCTASPCGRGVVDPRFHPRRWMMLPEG 89


>01_01_0466 + 3444444-3445256
          Length = 270

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +1

Query: 220 NPYHYNKIDSPALPPILVRRCSEGEVRAPPPYADYHQPILHEHPDVAMQSGTGHSALYLE 399
           NP H+++ + P LPP          V  PPP   +   +L   P  A+   T    LYLE
Sbjct: 32  NPRHFSR-NRPVLPP----------VEPPPPPRRWFHVVLRASPTAALTLATRADNLYLE 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.135    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,655,901
Number of Sequences: 37544
Number of extensions: 421048
Number of successful extensions: 1238
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)