Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0092
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              24   1.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   8.5  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 172 DHCEYAYQLKKDEVCINPYHY 234
           D+CEYAY+  K    ++P  Y
Sbjct: 122 DNCEYAYRFNKCYAELSPRTY 142


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 202 SSAGMHTRNGPLASVHVGSVTEANARVCSKPHAVGLSCT 86
           SSAG+    G +ASV  G+ +    +  +  H  G S T
Sbjct: 9   SSAGVGVVGGTIASVVAGAASLTLVKAETPEHLAGTSTT 47


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 420 HVLCKCSLEIQCAVSCTRLHGN 355
           H+L K +L +   V C + +GN
Sbjct: 308 HILQKTTLNMLTQVECYKYYGN 329


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = -2

Query: 306 RGADLALATATHQDRGKSRRIDFVVMIGINAHLVLLQLVCILAMVH 169
           +GA L+L T          R+D  ++I      +L  + C L   H
Sbjct: 127 QGASLSLITMELCGTTLQNRLDEAILIKNERICILKSITCALQFCH 172


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 113 TTCGRPFLYCPLMPLSFGFTLGIVTHFV*LF 21
           T CG  +    L+  S+    GI  +FV LF
Sbjct: 200 TACGTDYFNRGLLSASYLVCYGIWVYFVPLF 230


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 113 TTCGRPFLYCPLMPLSFGFTLGIVTHFV*LF 21
           T CG  +    L+  S+    GI  +FV LF
Sbjct: 76  TACGTDYFNRGLLSASYLVCYGIWVYFVPLF 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.135    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,692
Number of Sequences: 438
Number of extensions: 4168
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)