Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0092
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23460.1 68417.m03381 beta-adaptin, putative strong similarit...    28   5.2  
At3g47760.1 68416.m05203 ABC transporter family protein probable...    28   6.8  
At4g11380.1 68417.m01835 beta-adaptin, putative strong similarit...    27   9.0  
At2g43150.1 68415.m05358 proline-rich extensin-like family prote...    27   9.0  

>At4g23460.1 68417.m03381 beta-adaptin, putative strong similarity
           to SP|Q10567 Adapter-related protein complex 1 beta 1
           subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
           [Drosophila melanogaster] GI:434902; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 893

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 129 ALASVTEPT*TEASGPLRVCIPAEEGRGVH*SLSL 233
           A+  V EPT T +  PL V +PA +G+G+  S  L
Sbjct: 651 AIVPVDEPT-TPSGRPLPVVLPASKGQGLQISAQL 684


>At3g47760.1 68416.m05203 ABC transporter family protein probable
           transport protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 872

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 481 ISEDG-DPMDHNDNMNLTRLSPSPGGLXXEASPVLYHEPGVLVQHQLL 621
           IS  G DP     N N  + SPSP GL  + S +      + V H+L+
Sbjct: 494 ISSSGIDPFFFLKNQNPFKKSPSPYGLQRQVSAIAIEMEKLDVAHELM 541


>At4g11380.1 68417.m01835 beta-adaptin, putative strong similarity
           to SP|Q10567 Adapter-related protein complex 1 beta 1
           subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
           [Drosophila melanogaster] GI:434902; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 894

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 117 LQTLALASVTEPT*TEASGPLRVCIPAEEGRGVH*SLSLQQ 239
           L   A+  V +P  T++  PL V +PA  G+G+  S  L +
Sbjct: 648 LDNAAIVPVDDPI-TQSGPPLPVVVPASSGQGLQISAQLSR 687


>At2g43150.1 68415.m05358 proline-rich extensin-like family protein
           similar to CRANTZ hydroxyproline-rich glycoprotein
           [Manihot esculenta] gi|7211797|gb|AAF40442; similar to
           extensin gi|1165322|gb|AAB53156; contains proline-rich
           extensin domains, INTERPRO:IPR002965
          Length = 212

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +1

Query: 223 PYHYNKIDSPAL--PPILVRRCSEGEVRAPPPYADYHQP 333
           PY+Y+    P    PP  V       V++PPP   YH P
Sbjct: 71  PYYYHSPPPPVKSPPPPYVYSSPPPPVKSPPPPYYYHSP 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.135    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,896,667
Number of Sequences: 28952
Number of extensions: 303040
Number of successful extensions: 864
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)