Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0091
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    29   0.69 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   1.6  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.1  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   4.8  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   6.4  

>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 26/83 (31%), Positives = 36/83 (43%)
 Frame = +3

Query: 222 VKVLFHWKFFFGGLQ*ILFCISLGG*RKLLDTTFALESHHQNLPAMSSLICLASVSALST 401
           V++ F W   FGG       + + G   ++ T   L      LPA  S+   A+ SA   
Sbjct: 96  VRLTFSWGISFGGPAAYWSAMLVTGFCSIV-TAACLAEICSALPAAGSIYLWAAESAGPR 154

Query: 402 FGCWLSSSPVAKSATCLTTSVAS 470
           FG ++S      S T  TT VAS
Sbjct: 155 FGRFVSFLVAWWSTTAWTTFVAS 177


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 345 NLPAMSSLICLASVSALSTFGCWLSSS-PVAKSATCLTT 458
           N PA+SS   L SVS  ST   + SSS  +A S T  +T
Sbjct: 207 NSPAVSSSETLTSVSITSTESAYTSSSVDIAASTTASST 245


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +2

Query: 227  SPVSLEIF--FWRITINFVLYQPRRLK 301
            SP++LE+    W ++ N VLY P+R +
Sbjct: 1312 SPITLEMLQVAWNVSPNIVLYAPKRFQ 1338


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 171 CTSTVNWTYLNGLLISYA*IICGDNG 94
           CT+ ++WT L G  + Y  I+C  NG
Sbjct: 252 CTTYMHWTPLKGQKMHY--IVCDTNG 275


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 415 SQQPKVDSALTEARQIRDDIAGKF**CDSKAKVVSSNFL*PPRLIQNKIYCNPPKK 248
           S  P+  S+L+++R+I  +          K    SSN L P   +QN++    P K
Sbjct: 11  SHLPQSSSSLSQSREIAKEFTSNIPPPTIKTNSSSSNILKPRLSLQNEVNQLKPAK 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,890
Number of Sequences: 5004
Number of extensions: 37827
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)